Cmyd_10000491 (Chelonia mydas)
p53

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00870 (P53) IPR011615 Cmyd_10000491 T311228_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TP53
M09337_2.00
Homo sapiens
DRRCWTGYYCAGRCATGYYY

RRRCATGYCTGRRCAWGYYH
Misc
Kulakovskiy et al.(2013)
P53_HUMAN.H11MO.0.A
0.719 0.719
TP53
M09621_2.00
Homo sapiens
NNDRCAWGYHNNDRCWWGYH

DRCWWGYHNNDRCWTGYHNN
Misc
Heinz et al.(2010)
Saos-p53
0.719 0.719
TP53
M11197_2.00
Homo sapiens
RGACATGCCCGGGCATGTYC

GRACATGCCCGGGCATGTCY
Transfac
Matys et al.(2006)
V$P53_01
0.719 0.719
TP53
M11198_2.00
Homo sapiens
NGRCWTGYYY

RRRCAWGYCN
Transfac
Matys et al.(2006)
V$P53_02
0.719 0.719
TP53
M11199_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$P53_03
0.719 0.719
TP53
M11200_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$P53_04
0.719 0.719
TP53
M11201_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$P53_05
0.719 0.719
TP53
M11202_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$P53_Q3_01
0.719 0.719
TP53
M11203_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$P53_Q3
0.719 0.719
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10000491 p53 61 256

Links

Other p53 family TFs
Other Chelonia mydas TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA003303 Oryza indica BGIOSGA003303 N 0.000
GRMZM5G853066 Zea mays GRMZM5G853066 N 0.000
LPERR01G11040 Leersia perrieri LPERR01G11040 N 0.000
OB01G21760 Oryza brachyantha OB01G21760 N 0.000
OBART01G12040 Oryza barthii OBART01G12040 N 0.000
OGLUM01G13480 Oryza glumaepatula OGLUM01G13480 N 0.000
ONIVA01G14270 Oryza nivara ONIVA01G14270 N 0.000
OPUNC01G11720 Oryza punctata OPUNC01G11720 N 0.000
ORGLA01G0101600 Oryza glaberrima ORGLA01G0101600 N 0.000