CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSP00000264731-D1
(
Bos grunniens
)
p53
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00870 (P53)
IPR011615
ENSP00000264731-D1
T311232_2.00
GigaDB (2015-Oct-22)
NCBI Gene Info:
This gene encodes a member of the p53 family of transcription factors. The functional domains of p53 family proteins include an N-terminal transactivation domain, a central DNA-binding domain and an oligomerization domain. Alternative splicing of this gene and the use of alternative promoters results in multiple transcript variants encoding different isoforms that vary in their functional properties. These isoforms function during skin development and maintenance, adult stem/progenitor cell regulation, heart development and premature aging. Some isoforms have been found to protect the germline by eliminating oocytes or testicular germ cells that have suffered DNA damage. Mutations in this gene are associated with ectodermal dysplasia, and cleft lip/palate syndrome 3 (EEC3); split-hand/foot malformation 4 (SHFM4); ankyloblepharon-ectodermal defects-cleft lip/palate; ADULT syndrome (acro-dermato-ungual-lacrimal-tooth); limb-mammary syndrome; Rap-Hodgkin syndrome (RHS); and orofacial cleft 8. [provided by RefSeq, Aug 2016]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Trp63
M09338_2.00
Mus musculus
DRCAWGYHCHRRCHTGYHN
NDRCADGYYDGDRCWTGYH
Misc
Kulakovskiy et al.(2013)
P63_MOUSE.H11MO.0.B
1.000
1.000
Trp73
M03438_2.00
Mus musculus
DRCAWGTYNNRACAYGYH
DRCRTGTYNNRACWTGYH
SELEX
Jolma et al.(2013)
Tp73_1
0.857
0.857
TP73
M08035_2.00
Homo sapiens
RCADGYHSDGRCWDG
CHWGYCHSDRCHTGY
ChIP-seq
Chen et al.(2011)
GSE15704_TP73_rapamycin
0.857
0.857
TP73
M08036_2.00
Homo sapiens
DRRCAWGYHCWGRCWTGYH
DRCAWGYCWGDRCWTGYYH
ChIP-seq
Chen et al.(2011)
GSE15704_TP73_vehicle
0.857
0.857
TP73
M08037_2.00
Homo sapiens
RCMDGYBCHNDCHKG
CMDGHNDGVRCHKGY
ChIP-seq
Chen et al.(2011)
GSE18650_TP73
0.857
0.857
TP73
M09336_2.00
Homo sapiens
NDDCHWGYYCMRRCHTGYH
DRCADGYYKGRRCWDGHHN
Misc
Kulakovskiy et al.(2013)
P73_HUMAN.H11MO.0.A
0.857
0.857
Trp73
M09339_2.00
Mus musculus
NDDCHWGYYCMRRCHTGYH
DRCADGYYKGRRCWDGHHN
Misc
Kulakovskiy et al.(2013)
P73_MOUSE.H11MO.0.B
0.857
0.857
TP73
M11196_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$P73_Q6
0.857
0.857
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000264731-D1
p53
143
339
PAIPSNTDYPGPHSFDVSFQQSSTAKSATWTYSTELKKLYCQIAKTCPIQIKVMTPPPQGAVIRAMPVYKKAEHVTEVVKRCPNHELSREFNEGQIAPPSHLIRVEGNSHAQYVEDPITGRQSVLVPYEPPQVGTEFTTVLYNFMCNSSCVGGMNRRPILIIVTLETRDGQVLGRRCFEARICACPGRDRKADEDSI
Links
Other
p53
family TFs
Other
Bos grunniens
TFs
122 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TP63
Macaca mulatta
ENSMMUG00000016466
I
1.000
TP63
Myotis lucifugus
ENSMLUG00000015597
I
1.000
TP63
Monodelphis domestica
ENSMODG00000015060
I
1.000
ENSMPUG00000003438
Mustela putorius furo
ENSMPUG00000003438
I
1.000
ENSNLEG00000006723
Nomascus leucogenys
ENSNLEG00000006723
I
1.000
Trp63
Mus musculus
ENSMUSG00000022510
D
1.000
TP63
Microcebus murinus
ENSMICG00000005240
I
1.000
TP63
Meleagris gallopavo
ENSMGAG00000007535
I
1.000
TP63
Gorilla gorilla
ENSGGOG00000005113
I
1.000
TP63
Gallus gallus
ENSGALG00000007324
I
1.000
Brh_R005208
Buceros rhinoceros
Brh_R005208
I
1.000
TP63
Sus scrofa
ENSSSCG00000025592
I
1.000
Afo_R010233
Aptenodytes forsteri
Afo_R010233
I
1.000
TP63
Ornithorhynchus anatinus
ENSOANG00000013795
I
1.000
Aan_R013385
Calypte anna
Aan_R013385
I
1.000
TP63
Taeniopygia guttata
ENSTGUG00000009377
I
1.000
ENSPPYG00000014401
Pongo abelii
ENSPPYG00000014401
I
1.000
TP63
Pan troglodytes
ENSPTRG00000015733
I
1.000
Tp63
Rattus norvegicus
ENSRNOG00000001924
I
1.000
ENSSTOG00000013771
Ictidomys tridecemlineatus
ENSSTOG00000013771
I
1.000
TP63
Procavia capensis
ENSPCAG00000005011
I
1.000
ENSTSYG00000003709
Tarsius syrichta
ENSTSYG00000003709
I
1.000
TP63
Oryctolagus cuniculus
ENSOCUG00000016465
I
1.000
ENSOARG00000020478
Ovis aries
ENSOARG00000020478
I
1.000
TP63
Otolemur garnettii
ENSOGAG00000003838
I
1.000
TP63
Tursiops truncatus
ENSTTRG00000011638
I
1.000
ENSPANG00000006656
Papio anubis
ENSPANG00000006656
I
1.000
ENSP00000264731
Macaca fascicularis
ENSP00000264731
I
1.000
TP63
Loxodonta africana
ENSLAFG00000031461
I
1.000
Pvit_07832
Pogona vitticeps
Pvit_07832
I
1.000
Myotis_brandtii_Tp63_10011644
Myotis brandtii
Myotis_brandtii_Tp63_10011644
I
1.000
TP63
Dasypus novemcinctus
ENSDNOG00000016582
I
1.000
TP63
Equus caballus
ENSECAG00000018546
I
1.000
TP63
Callithrix jacchus
ENSCJAG00000014256
I
1.000
TP63
Canis familiaris
ENSCAFG00000013961
I
1.000
ENSAMEG00000000763
Ailuropoda melanoleuca
ENSAMEG00000000763
I
1.000
Tal_R007660
Tyto alba
Tal_R007660
I
1.000
TP63
Bos taurus
ENSBTAG00000015460
I
1.000
ENSFALG00000007393
Ficedula albicollis
ENSFALG00000007393
I
1.000
TP63
Cavia porcellus
ENSCPOG00000014770
I
1.000
Gfo_R004420
Geospiza fortis
Gfo_R004420
I
1.000
TP63
Felis catus
ENSFCAG00000000790
I
1.000
TP63
Homo sapiens
ENSG00000073282
D
1.000
Trp63
Dipodomys ordii
ENSDORG00000002061
I
0.995
ENSAPLG00000012917
Anas platyrhynchos
ENSAPLG00000012917
I
0.995
TP63
Sorex araneus
ENSSARG00000012752
I
0.995
TP63
Pteropus vampyrus
ENSPVAG00000009056
I
0.995
ENSPSIG00000016009
Pelodiscus sinensis
ENSPSIG00000016009
I
0.990
tp63.L
Xenopus laevis
XB-GENE-865317
I
0.985
ENSLACG00000014214
Latimeria chalumnae
ENSLACG00000014214
I
0.974
ENSLOCG00000005148
Lepisosteus oculatus
ENSLOCG00000005148
I
0.974
TP63
Choloepus hoffmanni
ENSCHOG00000010497
I
0.969
ENSONIG00000019325
Oreochromis niloticus
ENSONIG00000019325
I
0.964
tp63
Xenopus tropicalis
XB-GENE-479868
I
0.964
tp63
Danio rerio
ENSDARG00000044356
I
0.964
ENSPFOG00000000910
Poecilia formosa
ENSPFOG00000000910
I
0.959
ENSGMOG00000000413
Gadus morhua
ENSGMOG00000000413
I
0.959
ENSAMXG00000004843
Astyanax mexicanus
ENSAMXG00000004843
I
0.959
tp63
Oryzias latipes
ENSORLG00000015665
I
0.959
ENSXMAG00000016425
Xiphophorus maculatus
ENSXMAG00000016425
I
0.954
tp63
Takifugu rubripes
ENSTRUG00000003420
I
0.949
tp63
Tetraodon nigroviridis
ENSTNIG00000013774
I
0.944
ENSGACG00000013629
Gasterosteus aculeatus
ENSGACG00000013629
I
0.944
TP73
Canis familiaris
ENSCAFG00000019489
I
0.883
ENSMPUG00000007407
Mustela putorius furo
ENSMPUG00000007407
I
0.878
TP73
Felis catus
ENSFCAG00000011627
I
0.878
TP73
Erinaceus europaeus
ENSEEUG00000013128
I
0.867
ENSP00000367545-D1
Bos grunniens
ENSP00000367545-D1
I
0.862
Aan_R005960
Calypte anna
Aan_R005960
I
0.862
Afo_R003301
Aptenodytes forsteri
Afo_R003301
I
0.862
Cmyd_10015921
Chelonia mydas
Cmyd_10015921
I
0.862
Alligator_sinensis_CCG011609.1
Alligator sinensis
Alligator_sinensis_CCG011609.1
I
0.862
TP73
Bos taurus
ENSBTAG00000005812
I
0.862
TP73
Gorilla gorilla
ENSGGOG00000015559
I
0.862
TP73
Cavia porcellus
ENSCPOG00000010908
I
0.862
TP73
Tursiops truncatus
ENSTTRG00000003435
I
0.862
Pvit_15794
Pogona vitticeps
Pvit_15794
I
0.862
Trp73
Mus musculus
ENSMUSG00000029026
D
0.860
ENSSTOG00000029194
Ictidomys tridecemlineatus
ENSSTOG00000029194
I
0.857
ENSP00000367545
Macaca fascicularis
ENSP00000367545
I
0.857
TP73
Taeniopygia guttata
ENSTGUG00000002743
I
0.857
Gfo_R009749
Geospiza fortis
Gfo_R009749
I
0.857
TP73
Otolemur garnettii
ENSOGAG00000006041
I
0.857
ENSLACG00000019068
Latimeria chalumnae
ENSLACG00000019068
I
0.857
TP73
Loxodonta africana
ENSLAFG00000007013
I
0.857
TP73
Macaca mulatta
ENSMMUG00000016569
I
0.857
TP73
Anolis carolinensis
ENSACAG00000001622
I
0.857
ENSPFOG00000010828
Poecilia formosa
ENSPFOG00000010828
I
0.857
TP73
Homo sapiens
ENSG00000078900
D
0.857
ENSPSIG00000004164
Pelodiscus sinensis
ENSPSIG00000004164
I
0.857
ENSAPLG00000003880
Anas platyrhynchos
ENSAPLG00000003880
I
0.857
ENSCSAG00000000724
Chlorocebus sabaeus
ENSCSAG00000000724
I
0.852
ENSLOCG00000005255
Lepisosteus oculatus
ENSLOCG00000005255
I
0.852
ENSFALG00000009625
Ficedula albicollis
ENSFALG00000009625
I
0.852
TP73
Gallus gallus
ENSGALG00000001006
I
0.852
ENSONIG00000002106
Oreochromis niloticus
ENSONIG00000002106
I
0.852
tp73
Danio rerio
ENSDARG00000017953
I
0.852
ENSOARG00000015833
Ovis aries
ENSOARG00000015833
I
0.852
ENSPANG00000010294
Papio anubis
ENSPANG00000010294
I
0.852
TP73
Procavia capensis
ENSPCAG00000000703
I
0.852
Tp73
Rattus norvegicus
ENSRNOG00000024707
I
0.852
tp73
Tetraodon nigroviridis
ENSTNIG00000011978
I
0.851
tp73
Xenopus tropicalis
XB-GENE-482857
I
0.847
tp73
Takifugu rubripes
ENSTRUG00000014931
I
0.847
ENSAMXG00000013958
Astyanax mexicanus
ENSAMXG00000013958
I
0.847
tp73
Oryzias latipes
ENSORLG00000004402
I
0.842
ENSCSAG00000009062
Chlorocebus sabaeus
ENSCSAG00000009062
I
0.837
Ogr07265
Ophisaurus gracilis
Ogr07265
I
0.837
tp73
Gasterosteus aculeatus
ENSGACG00000006547
I
0.832
Ogr15303
Ophisaurus gracilis
Ogr15303
I
0.832
Brh_R004866
Buceros rhinoceros
Brh_R004866
I
0.816
TP73
Pteropus vampyrus
ENSPVAG00000008937
I
0.791
TP73
Sus scrofa
ENSSSCG00000025685
I
0.778
TP63
Vicugna pacos
ENSVPAG00000012350
I
0.769
ENSAMEG00000009237
Ailuropoda melanoleuca
ENSAMEG00000009237
I
0.765
TP63
Tupaia belangeri
ENSTBEG00000004215
I
0.760
Cmyd_10010564
Chelonia mydas
Cmyd_10010564
I
0.757
ENSPMAG00000009535
Petromyzon marinus
ENSPMAG00000009535
I
0.745
ENSSHAG00000005668
Sarcophilus harrisii
ENSSHAG00000005668
I
0.730
TP73
Meleagris gallopavo
ENSMGAG00000001562
I
0.724
TP73
Equus caballus
ENSECAG00000000771
I
0.724
ENSXMAG00000017360
Xiphophorus maculatus
ENSXMAG00000017360
I
0.709