CBN25998 (Caenorhabditis brenneri)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 CBN25998 T311475_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Poxm
M03944_2.00
Drosophila melanogaster
CAVTCAWGCGTGACR

YGTCACGCWTGABTG
SELEX
Nitta et al.(2015)
Poxm_1
0.760 0.760
Poxm
M03945_2.00
Drosophila melanogaster
NYSAWGCRTRACS

SGTYAYGCWTSRN
SELEX
Nitta et al.(2015)
Poxm_2
0.760 0.760
Poxm
M06436_2.00
Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA

TCAYGSNYNDNBKNNNNNN
B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129
0.760 0.760
pax9
M11204_2.00
Danio rerio Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX9_B
0.720 0.720
PAX1
M03442_2.00
Homo sapiens
DBCANTSAWGCGTGACS

SGTCACGCWTSANTGVH
SELEX
Jolma et al.(2013)
PAX1_1
0.712 0.712
PAX9
M03444_2.00
Homo sapiens
NKCANTSAWGCGTGACS

SGTCACGCWTSANTGMN
SELEX
Jolma et al.(2013)
PAX9_1
0.712 0.712
PAX1
M05687_2.00
Homo sapiens
BCRNTSRWGCGTGACSN

NSGTCACGCWYSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX
0.712 0.712
PAX9
M05689_2.00
Homo sapiens
BHRNYSRDSCGTRACSN

NSGTYACGSHYSRNYDV
SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX
0.712 0.712
PAX1
M11207_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX1_B
0.712 0.712
PAX1
M05688_2.00
Homo sapiens
BCRNTSAWGCGTGACSN

NSGTCACGCWTSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX
0.712 0.712
PAX9
M05690_2.00
Homo sapiens
BCRNTSAWSCGYGACNN

NNGTCRCGSWTSANYGV
SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX
0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN25998 Paired box 58 182

Links

Other Paired box family TFs
Other Caenorhabditis brenneri TFs

218 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AALB006349 Anopheles albimanus AALB006349 I 0.752
Aan_R005718 Calypte anna Aan_R005718 I 0.712
AARA001070 Anopheles arabiensis AARA001070 I 0.752
AATE019429 Anopheles atroparvus AATE019429 I 0.752
ACAC_0001249001 Angiostrongylus cantonensis ACAC_0001249001 I 0.712
ACEP27324 Atta cephalotes ACEP27324 I 0.744
ACOC_0000962101 Angiostrongylus costaricensis ACOC_0000962101 I 0.736
ACUA000500 Anopheles culicifacies ACUA000500 I 0.752
ACYPI005583 Acyrthosiphon pisum ACYPI005583 I 0.720
ADAC006866 Anopheles darlingi ADAC006866 I 0.752
ADIR000995 Anopheles dirus ADIR000995 I 0.752
AEPI005638 Anopheles epiroticus AEPI005638 I 0.752
AFAF006072 Anopheles farauti AFAF006072 I 0.752
Afo_R004464 Aptenodytes forsteri Afo_R004464 I 0.712
AFUN001734 Anopheles funestus AFUN001734 I 0.755
AGAP001493 Anopheles gambiae AGAP001493 I 0.752
Alligator_sinensis_CCG004503.1 Alligator sinensis Alligator_sinensis_CCG004503.1 I 0.712
ALUE_0000964501 Ascaris lumbricoides ALUE_0000964501 I 0.768
AMAM000649 Anopheles maculatus AMAM000649 I 0.752
AMEC017516 Anopheles melas AMEC017516 I 0.752
AMEM000130 Anopheles merus AMEM000130 I 0.752
AMIN005066 Anopheles minimus AMIN005066 I 0.752
ANCCAN_01783 Ancylostoma caninum ANCCAN_01783 I 0.726
ANCCEY_02265 Ancylostoma ceylanicum ANCCEY_02265 I 0.736
AQUA002471 Anopheles quadriannulatus AQUA002471 I 0.752
ASIM_0001701001 Anisakis simplex ASIM_0001701001 I 0.704
ASIS022893 Anopheles sinensis ASIS022893 I 0.755
ASTEI07741 Anopheles stephensi ASTEI07741 I 0.752
ASU_08322 Ascaris suum ASU_08322 I 0.768
BGIBMGA000787 Bombyx mori BGIBMGA000787 I 0.728
CapteG64892 Capitella teleta CapteG64892 I 0.728
CBG24786 Caenorhabditis briggsae CBG24786 I 0.931
CBN07010 Caenorhabditis brenneri CBN07010 I 1.000
Cflo_08772--XP_001121954.1_APIME Camponotus floridanus Cflo_08772--XP_001121954.1_APIME I 0.736
CJA06788 Caenorhabditis japonica CJA06788 I 0.904
CLEC012019 Cimex lectularius CLEC012019 I 0.728
Cmyd_10010133 Chelonia mydas Cmyd_10010133 I 0.704
CRE05503 Caenorhabditis remanei CRE05503 I 0.992
DAPPUDRAFT_307722 Daphnia pulex DAPPUDRAFT_307722 I 0.736
DAPPUDRAFT_38922 Daphnia pulex DAPPUDRAFT_38922 I 0.704
DICVIV_10778 Dictyocaulus viviparus DICVIV_10778 I 0.736
ENSACAG00000001481 Anolis carolinensis ENSACAG00000001481 I 0.712
ENSACAG00000010563 Anolis carolinensis ENSACAG00000010563 I 0.712
ENSAMEG00000002906 Ailuropoda melanoleuca ENSAMEG00000002906 I 0.712
ENSAMEG00000012642 Ailuropoda melanoleuca ENSAMEG00000012642 I 0.712
ENSAMXG00000002161 Astyanax mexicanus ENSAMXG00000002161 I 0.720
ENSAMXG00000008583 Astyanax mexicanus ENSAMXG00000008583 I 0.712
ENSAMXG00000018287 Astyanax mexicanus ENSAMXG00000018287 I 0.712
ENSAPLG00000012856 Anas platyrhynchos ENSAPLG00000012856 I 0.712
ENSBTAP00000008861-D1 Bos grunniens ENSBTAP00000008861-D1 I 0.712
ENSCING00000024971 Ciona intestinalis ENSCING00000024971 I 0.704
ENSCSAG00000011068 Chlorocebus sabaeus ENSCSAG00000011068 I 0.712
ENSCSAG00000015463 Chlorocebus sabaeus ENSCSAG00000015463 I 0.712
ENSCSAVG00000007806 Ciona savignyi ENSCSAVG00000007806 I 0.712
ENSFALG00000006155 Ficedula albicollis ENSFALG00000006155 I 0.712
ENSGALG00000028576 Gallus gallus ENSGALG00000028576 I 0.712
ENSGMOG00000009128 Gadus morhua ENSGMOG00000009128 I 0.720
ENSGMOG00000017053 Gadus morhua ENSGMOG00000017053 I 0.704
ENSGMOG00000018913 Gadus morhua ENSGMOG00000018913 I 0.712
ENSLACG00000009610 Latimeria chalumnae ENSLACG00000009610 I 0.712
ENSLACG00000015921 Latimeria chalumnae ENSLACG00000015921 I 0.720
ENSLOCG00000013992 Lepisosteus oculatus ENSLOCG00000013992 I 0.720
ENSLOCG00000016871 Lepisosteus oculatus ENSLOCG00000016871 I 0.712
ENSMEUG00000002095 Macropus eugenii ENSMEUG00000002095 I 0.712
ENSMEUG00000010140 Macropus eugenii ENSMEUG00000010140 I 0.712
ENSMPUG00000001187 Mustela putorius furo ENSMPUG00000001187 I 0.712
ENSMPUG00000016259 Mustela putorius furo ENSMPUG00000016259 I 0.712
ENSNLEG00000003346 Nomascus leucogenys ENSNLEG00000003346 I 0.712
ENSNLEG00000010049 Nomascus leucogenys ENSNLEG00000010049 I 0.712
ENSOARG00000004951 Ovis aries ENSOARG00000004951 I 0.712
ENSOARG00000008050 Ovis aries ENSOARG00000008050 I 0.712
ENSOGAG00000013131 Otolemur garnettii ENSOGAG00000013131 I 0.712
ENSONIG00000000990 Oreochromis niloticus ENSONIG00000000990 I 0.720
ENSONIG00000008137 Oreochromis niloticus ENSONIG00000008137 I 0.712
ENSONIG00000018717 Oreochromis niloticus ENSONIG00000018717 I 0.720
ENSP00000355245 Macaca fascicularis ENSP00000355245 I 0.712
ENSP00000381499 Macaca fascicularis ENSP00000381499 I 0.712
ENSP00000384817-D1 Bos grunniens ENSP00000384817-D1 I 0.712
ENSPANG00000000932 Papio anubis ENSPANG00000000932 I 0.712
ENSPANG00000008282 Papio anubis ENSPANG00000008282 I 0.712
ENSPFOG00000003208 Poecilia formosa ENSPFOG00000003208 I 0.712
ENSPFOG00000017550 Poecilia formosa ENSPFOG00000017550 I 0.720
ENSPMAG00000010308 Petromyzon marinus ENSPMAG00000010308 I 0.712
ENSPPYG00000005755 Pongo abelii ENSPPYG00000005755 I 0.712
ENSPPYG00000010758 Pongo abelii ENSPPYG00000010758 I 0.712
ENSPSIG00000010961 Pelodiscus sinensis ENSPSIG00000010961 I 0.712
ENSSHAG00000005531 Sarcophilus harrisii ENSSHAG00000005531 I 0.712
ENSSHAG00000017556 Sarcophilus harrisii ENSSHAG00000017556 I 0.712
ENSSSCG00000001943 Sus scrofa ENSSSCG00000001943 I 0.712
ENSSTOG00000003000 Ictidomys tridecemlineatus ENSSTOG00000003000 I 0.712
ENSSTOG00000015730 Ictidomys tridecemlineatus ENSSTOG00000015730 I 0.712
ENSTGUG00000007526 Taeniopygia guttata ENSTGUG00000007526 I 0.712
ENSTNIG00000002104 Tetraodon nigroviridis ENSTNIG00000002104 I 0.720
ENSTSYG00000008085 Tarsius syrichta ENSTSYG00000008085 I 0.745
ENSXMAG00000015762 Xiphophorus maculatus ENSXMAG00000015762 I 0.720
ENSXMAG00000019114 Xiphophorus maculatus ENSXMAG00000019114 I 0.712
estExt_fgenesh2_pg.C_420056 Branchiostoma floridae estExt_fgenesh2_pg.C_420056 I 0.704
EVEC_0000163101 Enterobius vermicularis EVEC_0000163101 I 0.784
GA21910 Drosophila pseudoobscura FBgn0081895 I 0.760
GB52620 Apis mellifera GB52620 I 0.736
GE24855 Drosophila yakuba FBgn0241954 I 0.760
GF16668 Drosophila ananassae FBgn0093689 I 0.760
GG17455 Drosophila erecta FBgn0109681 I 0.760
GH17421 Drosophila grimshawi FBgn0124891 I 0.760
GI22750 Drosophila mojavensis FBgn0145477 I 0.760
GJ22751 Drosophila virilis FBgn0209855 I 0.760
GK14101 Drosophila willistoni FBgn0216107 I 0.760
GL24118 Drosophila persimilis FBgn0161708 I 0.760
GM26349 Drosophila sechellia FBgn0181202 I 0.760
HHAL005838-PA Halyomorpha halys HHAL005838-PA I 0.769
HMEL004481 Heliconius melpomene HMEL004481 I 0.728
HPBE_0001739601 Heligmosomoides bakeri HPBE_0001739601 I 0.728
HPLM_0000508801 Haemonchus placei HPLM_0000508801 I 0.720
ISCW011634 Ixodes scapularis ISCW011634 I 0.744
KGM_09724 Danaus plexippus KGM_09724 I 0.728
L596_g23601 Steinernema carpocapsae L596_g23601 I 0.736
L889_g19368 Steinernema feltiae L889_g19368 I 0.736
L892_g31296 Steinernema scapterisci L892_g31296 I 0.736
L893_g11572 Steinernema glaseri L893_g11572 I 0.752
L898_g3148 Steinernema monticolum L898_g3148 I 0.744
LCUP007799 Lucilia cuprina LCUP007799 I 0.760
LLOJ004808 Lutzomyia longipalpis LLOJ004808 I 0.752
MDOA001030 Musca domestica MDOA001030 I 0.752
nDi.2.2.2.g06454 Dirofilaria immitis nDi.2.2.2.g06454 N 0.704
NV11293 Nasonia vitripennis NV11293 I 0.736
OESDEN_18680 Oesophagostomum dentatum OESDEN_18680 I 0.705
OFLC_0000054701 Onchocerca flexuosa OFLC_0000054701 N 0.704
Ogr18451 Ophisaurus gracilis Ogr18451 I 0.712
Ogr19508 Ophisaurus gracilis Ogr19508 I 0.712
pax-1 Caenorhabditis elegans WBGene00003937 I 0.976
PAX1 Erinaceus europaeus ENSEEUG00000007846 I 0.712
PAX1 Felis catus ENSFCAG00000004293 I 0.712
PAX1 Homo sapiens ENSG00000125813 D 0.712
PAX1 Loxodonta africana ENSLAFG00000008908 I 0.710
PAX1 Dasypus novemcinctus ENSDNOG00000033546 I 0.712
PAX1 Microcebus murinus ENSMICG00000016968 I 0.704
PAX1 Cavia porcellus ENSCPOG00000002886 I 0.712
PAX1 Gorilla gorilla ENSGGOG00000016075 I 0.712
PAX1 Monodelphis domestica ENSMODG00000006198 I 0.712
PAX1 Macaca mulatta ENSMMUG00000019409 I 0.712
pax1 Xenopus tropicalis XB-GENE-487951 I 0.712
PAX1 Myotis lucifugus ENSMLUG00000014710 I 0.712
PAX1 Canis familiaris ENSCAFG00000005170 I 0.712
PAX1 Bos taurus ENSBTAG00000006742 I 0.712
PAX1 Callithrix jacchus ENSCJAG00000005773 I 0.712
PAX1 Pteropus vampyrus ENSPVAG00000002604 I 0.712
PAX1 Pan troglodytes ENSPTRG00000013311 I 0.712
PAX1 Ornithorhynchus anatinus ENSOANG00000002008 I 0.712
PAX1 Procavia capensis ENSPCAG00000003556 I 0.712
pax1 Oryzias latipes ENSORLG00000017412 I 0.712
PAX1 Tursiops truncatus ENSTTRG00000002444 I 0.712
PAX1 Ochotona princeps ENSOPRG00000017249 I 0.712
PAX1 Otolemur garnettii ENSOGAG00000033162 I 0.712
PAX1 Oryctolagus cuniculus ENSOCUG00000003276 I 0.712
Pax1 Mus musculus ENSMUSG00000037034 I 0.712
Pax1 Dipodomys ordii ENSDORG00000016051 I 0.712
PAX1 Sus scrofa ENSSSCG00000007112 I 0.712
pax1.S Xenopus laevis XB-GENE-865751 I 0.712
pax1a Takifugu rubripes ENSTRUG00000008079 I 0.712
pax1a Gasterosteus aculeatus ENSGACG00000006987 I 0.712
pax1a Tetraodon nigroviridis ENSTNIG00000016891 I 0.712
pax1a Danio rerio ENSDARG00000008203 I 0.712
pax1b Danio rerio ENSDARG00000073814 I 0.712
PAX5 Tupaia belangeri ENSTBEG00000007983 I 0.745
PAX5 Tursiops truncatus ENSTTRG00000006049 I 0.745
PAX9 Microcebus murinus ENSMICG00000010808 I 0.712
PAX9 Equus caballus ENSECAG00000023712 I 0.712
PAX9 Canis familiaris ENSCAFG00000013690 I 0.712
PAX9 Myotis lucifugus ENSMLUG00000011407 I 0.712
PAX9 Meleagris gallopavo ENSMGAG00000012530 I 0.704
PAX9 Callithrix jacchus ENSCJAG00000016460 I 0.712
PAX9 Pteropus vampyrus ENSPVAG00000003728 I 0.717
PAX9 Dasypus novemcinctus ENSDNOG00000000352 I 0.712
PAX9 Cavia porcellus ENSCPOG00000010951 I 0.712
pax9 Danio rerio ENSDARG00000053829 D 0.720
PAX9 Bos taurus ENSBTAG00000009186 I 0.712
PAX9 Echinops telfairi ENSETEG00000002086 I 0.712
PAX9 Felis catus ENSFCAG00000001024 I 0.712
PAX9 Gorilla gorilla ENSGGOG00000001528 I 0.712
PAX9 Monodelphis domestica ENSMODG00000012681 I 0.712
Pax9 Mus musculus ENSMUSG00000001497 I 0.712
PAX9 Loxodonta africana ENSLAFG00000017541 I 0.712
PAX9 Sorex araneus ENSSARG00000000337 I 0.712
Pax9 Rattus norvegicus ENSRNOG00000008826 I 0.712
PAX9 Pan troglodytes ENSPTRG00000006281 I 0.712
PAX9 Ornithorhynchus anatinus ENSOANG00000014065 I 0.712
PAX9 Tupaia belangeri ENSTBEG00000002460 I 0.712
pax9 Takifugu rubripes ENSTRUG00000011965 I 0.720
PAX9 Homo sapiens ENSG00000198807 D 0.712
pax9 Gasterosteus aculeatus ENSGACG00000011298 I 0.720
pax9 Xenopus tropicalis XB-GENE-482238 I 0.712
PAX9 Taeniopygia guttata ENSTGUG00000012015 I 0.712
PAX9 Gallus gallus ENSGALG00000010114 I 0.712
PAX9 Macaca mulatta ENSMMUG00000009648 I 0.712
pax9 Tetraodon nigroviridis ENSTNIG00000019284 I 0.720
pax9.L Xenopus laevis XB-GENE-864845 I 0.712
PEQ_0000430901 Parascaris equorum PEQ_0000430901 I 0.784
PHUM515110 Pediculus humanus PHUM515110 I 0.752
Poxm Drosophila melanogaster FBgn0003129 D 0.760
PPAI009002 Phlebotomus papatasi PPAI009002 I 0.752
Pvit_17942 Pogona vitticeps Pvit_17942 I 0.712
RPRC009438 Rhodnius prolixus RPRC009438 I 0.716
RSKR_0001164600 Rhabditophanes kr3021 RSKR_0001164600 I 0.704
Sakowv30044183m.g Saccoglossus kowalevskii Sakowv30044183m.g I 0.720
SBAD_0000488901 Soboliphyme baturini SBAD_0000488901 I 0.704
SINV15629 Solenopsis invicta SINV15629 I 0.736
SMAR007866 Strigamia maritima SMAR007866 I 0.736
SMUV_0000337801 Syphacia muris SMUV_0000337801 I 0.784
SPAL_0000396700 Strongyloides papillosus SPAL_0000396700 I 0.728
SPU_006683 Strongylocentrotus purpuratus SPU_006683 I 0.704
SROB_0000822501 Schistosoma rodhaini SROB_0000822501 I 0.710
SSTP_0000083300 Strongyloides stercoralis SSTP_0000083300 I 0.728
SVE_0281100 Strongyloides venezuelensis SVE_0281100 I 0.720
SVUK_0000340101 Strongylus vulgaris SVUK_0000340101 I 0.703
TC008838 Tribolium castaneum TC008838 I 0.736
TCNE_0001785701 Toxocara canis TCNE_0001785701 I 0.768
TELCIR_14257 Teladorsagia circumcincta TELCIR_14257 I 0.712
YQE_12494 Dendroctonus ponderosae YQE_12494 I 0.736