CJA34444 (Caenorhabditis japonica)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 CJA34444 T311491_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
egl-38
M02426_2.00 		Caenorhabditis elegans
ACCGTGAYCAC
GTGRTCACGGT		 PBM
Weirauch et al.(2014)
pTH8981 		0.812 0.812
pax-2
M00706_2.00 		Caenorhabditis elegans
RMSCRTRACS
SGTYAYGSKY		 PBM
Narasimhan et al.(2015)
pTH10794 		0.812 0.812
sv
M01302_2.00 		Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN		 PBM
Lambert et al.(2019)
pTH9773 		0.781 0.781
sv
M03949_2.00 		Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN		 SELEX
Nitta et al.(2015)
sv_1 		0.781 0.781
sv
M06438_2.00 		Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY		 B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561 		0.781 0.781
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.750 0.750
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.750 0.750
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.750 0.750
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.750 0.750
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.750 0.750
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.750 0.750
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.750 0.750
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.750 0.750
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.750 0.750
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.750 0.750
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.750 0.750
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.750 0.750
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.750 0.750
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.750 0.750
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.750 0.750
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.750 0.750
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.750 0.750
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.750 0.750
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.750 0.750
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.750 0.750
PAX8
M05685_2.00 		Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX 		0.719 0.719
Pax8
M09624_2.00 		Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV		 Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938 		0.719 0.719
PAX8
M11205_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_01 		0.719 0.719
PAX8
M11206_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX8_B 		0.719 0.719
PAX8
M05686_2.00 		Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN		 SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX 		0.719 0.719
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CJA34444 Paired box 1 32

Links

Other Paired box family TFs
Other Caenorhabditis japonica TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SPAL_0000372000 Strongyloides papillosus SPAL_0000372000 I 0.844
RSKR_0000585500 Rhabditophanes kr3021 RSKR_0000585500 I 0.844
SSTP_0000522800 Strongyloides stercoralis SSTP_0000522800 I 0.844
PTRK_0001603600 Parastrongyloides trichosuri PTRK_0001603600 I 0.844
SVE_0227200 Strongyloides venezuelensis SVE_0227200 I 0.844
DICVIV_04707 Dictyocaulus viviparus DICVIV_04707 I 0.812
HCOI01205400 Haemonchus contortus HCOI01205400 I 0.812
TELCIR_18859 Teladorsagia circumcincta TELCIR_18859 I 0.812
TELCIR_10899 Teladorsagia circumcincta TELCIR_10899 I 0.812
pax-2 Caenorhabditis elegans WBGene00003938 D 0.812
GI14046 Drosophila mojavensis FBgn0136800 I 0.781
GM13025 Drosophila sechellia FBgn0167956 I 0.781
GL18401 Drosophila persimilis FBgn0156002 I 0.781
GJ13730 Drosophila virilis FBgn0200951 I 0.781
spa-sv Drosophila pseudoobscura FBgn0249275 I 0.781
MESCA003563 Megaselia scalaris MESCA003563 I 0.781
GH23966 Drosophila grimshawi FBgn0131423 I 0.781
LOAG_00159 Loa loa LOAG_00159 I 0.781
GK13586 Drosophila willistoni FBgn0215594 I 0.781
ALUE_0001419501 Ascaris lumbricoides ALUE_0001419501 I 0.781
nDi.2.2.2.g01404 Dirofilaria immitis nDi.2.2.2.g01404 I 0.781
EEL_0001009001 Elaeophora elaphi EEL_0001009001 I 0.781
nLs.2.1.2.g05197 Litomosoides sigmodontis nLs.2.1.2.g05197 I 0.781
OFLC_0001261901 Onchocerca flexuosa OFLC_0001261901 I 0.781
Bm1956 Brugia malayi Bm1956 I 0.781
SMUV_0000412301 Syphacia muris SMUV_0000412301 I 0.781
ANCCAN_01420 Ancylostoma caninum ANCCAN_01420 N 0.781
ASU_03705 Ascaris suum ASU_03705 I 0.781
LLOJ002076 Lutzomyia longipalpis LLOJ002076 I 0.781
Aan_R002178 Calypte anna Aan_R002178 I 0.750
Afo_R005136 Aptenodytes forsteri Afo_R005136 I 0.750
PAX2 Homo sapiens ENSG00000075891 D 0.750
Brh_R001926 Buceros rhinoceros Brh_R001926 I 0.750
ENSTSYG00000001117 Tarsius syrichta ENSTSYG00000001117 I 0.750
ENSP00000350844-D1 Bos grunniens ENSP00000350844-D1 I 0.750
GF20618 Drosophila ananassae FBgn0097624 I 0.750
ENSSSCG00000005345 Sus scrofa ENSSSCG00000005345 I 0.750
PAX5 Taeniopygia guttata ENSTGUG00000007215 I 0.750
ACUA027429 Anopheles culicifacies ACUA027429 I 0.750
AFUN011579 Anopheles funestus AFUN011579 I 0.750
AFAF010901 Anopheles farauti AFAF010901 I 0.750
ADIR000964 Anopheles dirus ADIR000964 I 0.750
AMEC016969 Anopheles melas AMEC016969 I 0.750
AMEM003247 Anopheles merus AMEM003247 I 0.750
ASTEI06196 Anopheles stephensi ASTEI06196 I 0.750
ASIS021176 Anopheles sinensis ASIS021176 I 0.750
AMIN002123 Anopheles minimus AMIN002123 I 0.750
PAX5 Pteropus vampyrus ENSPVAG00000000054 I 0.750
ACHR009800 Anopheles christyi ACHR009800 I 0.750
Pvit_15554 Pogona vitticeps Pvit_15554 I 0.750
Myotis_brandtii_PAX5_10017827 Myotis brandtii Myotis_brandtii_PAX5_10017827 I 0.750
Gfo_R013093 Geospiza fortis Gfo_R013093 I 0.750
pax2 Xenopus tropicalis XB-GENE-486801 D 0.750
pax5.L Xenopus laevis XB-GENE-865318 I 0.750
AARA001120 Anopheles arabiensis AARA001120 I 0.750
AALB006342 Anopheles albimanus AALB006342 I 0.750
XP_002935920 Xenopus tropicalis XP_002935920 I 0.750
ENSP00000350844 Macaca fascicularis ENSP00000350844 I 0.750
ENSSTOG00000024354 Ictidomys tridecemlineatus ENSSTOG00000024354 I 0.750
ENSFALG00000012983 Ficedula albicollis ENSFALG00000012983 I 0.750
PAX5 Felis catus ENSFCAG00000001628 I 0.750
PAX5 Echinops telfairi ENSETEG00000002360 I 0.750
PAX5 Erinaceus europaeus ENSEEUG00000012531 I 0.750
PAX5 Equus caballus ENSECAG00000000551 I 0.750
PAX5 Homo sapiens ENSG00000196092 D 0.750
Pax5B Gallus gallus ENSGALG00000016431 D 0.750
PAX5 Loxodonta africana ENSLAFG00000028851 I 0.750
ENSLACG00000013159 Latimeria chalumnae ENSLACG00000013159 I 0.750
ENSGMOG00000000463 Gadus morhua ENSGMOG00000000463 I 0.750
PAX5 Gorilla gorilla ENSGGOG00000003633 I 0.750
pax2b Danio rerio ENSDARG00000032578 D 0.750
ENSCSAG00000010751 Chlorocebus sabaeus ENSCSAG00000010751 I 0.750
AGAP000057 Anopheles gambiae AGAP000057 I 0.750
PAX5 Anolis carolinensis ENSACAG00000011646 I 0.750
ADAC004542 Anopheles darlingi ADAC004542 I 0.750
pax2.L Xenopus laevis XB-GENE-486805 I 0.750
ENSLOCG00000012825 Lepisosteus oculatus ENSLOCG00000012825 I 0.750
ENSAMEG00000010127 Ailuropoda melanoleuca ENSAMEG00000010127 I 0.750
PAX5 Bos taurus ENSBTAG00000012498 I 0.750
PAX5 Cavia porcellus ENSCPOG00000009987 I 0.750
PAX5 Callithrix jacchus ENSCJAG00000010379 I 0.750
PAX5 Choloepus hoffmanni ENSCHOG00000003521 I 0.750
PAX5 Canis familiaris ENSCAFG00000002357 I 0.750
PAX5 Microcebus murinus ENSMICG00000017679 I 0.750
Pax-2 Gallus gallus ENSGALG00000005689 I 0.750
ENSONIG00000016065 Oreochromis niloticus ENSONIG00000016065 I 0.750
ENSOGAG00000004773 Otolemur garnettii ENSOGAG00000004773 I 0.750
ENSOARG00000011518 Ovis aries ENSOARG00000011518 I 0.750
ENSPFOG00000003702 Poecilia formosa ENSPFOG00000003702 I 0.750
PAX5 Myotis lucifugus ENSMLUG00000012652 I 0.750
ENSPANG00000025475 Papio anubis ENSPANG00000025475 I 0.750
PAX5 Ochotona princeps ENSOPRG00000000734 I 0.750
PAX5 Procavia capensis ENSPCAG00000004660 I 0.750
PAX5 Ornithorhynchus anatinus ENSOANG00000007579 I 0.750
PAX5 Oryctolagus cuniculus ENSOCUG00000012281 I 0.750
PAX5 Monodelphis domestica ENSMODG00000002720 I 0.750
ENSMPUG00000006012 Mustela putorius furo ENSMPUG00000006012 I 0.750
ENSNLEG00000003664 Nomascus leucogenys ENSNLEG00000003664 I 0.750
PAX5 Pan troglodytes ENSPTRG00000020936 I 0.750
Pax5 Mus musculus ENSMUSG00000014030 D 0.750
ENSPPYG00000019064 Pongo abelii ENSPPYG00000019064 I 0.750
pax2/5/8-b Ciona intestinalis ENSCING00000005977 I 0.719
L898_g18055 Steinernema monticolum L898_g18055 I 0.719
ENSPFOG00000013202 Poecilia formosa ENSPFOG00000013202 I 0.719
L893_g8856 Steinernema glaseri L893_g8856 I 0.719
pax5 Tetraodon nigroviridis ENSTNIG00000005085 I 0.719
ENSPFOG00000019830 Poecilia formosa ENSPFOG00000019830 I 0.719
pax2b Takifugu rubripes ENSTRUG00000011987 I 0.719
ENSAMXG00000009227 Astyanax mexicanus ENSAMXG00000009227 I 0.719
pax2a Takifugu rubripes ENSTRUG00000008891 I 0.719
pax2a Danio rerio ENSDARG00000028148 I 0.719
pax2a Gasterosteus aculeatus ENSGACG00000008391 I 0.719
pax2b Gasterosteus aculeatus ENSGACG00000002432 I 0.719
pax8 Gasterosteus aculeatus ENSGACG00000016747 I 0.719
Pax5 Rattus norvegicus ENSRNOG00000024729 I 0.719
pax8 Xenopus tropicalis XB-GENE-483693 I 0.719
ENSONIG00000000205 Oreochromis niloticus ENSONIG00000000205 I 0.719
PAX8 Equus caballus ENSECAG00000009244 I 0.719
pax8 Oryzias latipes ENSORLG00000007225 I 0.719
L596_g7168 Steinernema carpocapsae L596_g7168 I 0.719
pax8 Danio rerio ENSDARG00000015879 I 0.719
ENSONIG00000018496 Oreochromis niloticus ENSONIG00000018496 I 0.719
Pax8 Dipodomys ordii ENSDORG00000002606 I 0.719
L889_g28670 Steinernema feltiae L889_g28670 I 0.719