ENSCSAVG00000007806 (Ciona savignyi)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 ENSCSAVG00000007806 T311608_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX1
M03442_2.00
Homo sapiens
DBCANTSAWGCGTGACS

SGTCACGCWTSANTGVH
SELEX
Jolma et al.(2013)
PAX1_1
0.904 0.904
PAX9
M03444_2.00
Homo sapiens
NKCANTSAWGCGTGACS

SGTCACGCWTSANTGMN
SELEX
Jolma et al.(2013)
PAX9_1
0.904 0.904
PAX1
M05687_2.00
Homo sapiens
BCRNTSRWGCGTGACSN

NSGTCACGCWYSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX
0.904 0.904
PAX9
M05689_2.00
Homo sapiens
BHRNYSRDSCGTRACSN

NSGTYACGSHYSRNYDV
SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX
0.904 0.904
PAX1
M11207_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX1_B
0.904 0.904
PAX1
M05688_2.00
Homo sapiens
BCRNTSAWGCGTGACSN

NSGTCACGCWTSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX
0.904 0.904
PAX9
M05690_2.00
Homo sapiens
BCRNTSAWSCGYGACNN

NNGTCRCGSWTSANYGV
SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX
0.904 0.904
pax9
M11204_2.00
Danio rerio Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX9_B
0.888 0.888
Poxm
M03944_2.00
Drosophila melanogaster
CAVTCAWGCGTGACR

YGTCACGCWTGABTG
SELEX
Nitta et al.(2015)
Poxm_1
0.872 0.872
Poxm
M03945_2.00
Drosophila melanogaster
NYSAWGCRTRACS

SGTYAYGCWTSRN
SELEX
Nitta et al.(2015)
Poxm_2
0.872 0.872
Poxm
M06436_2.00
Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA

TCAYGSNYNDNBKNNNNNN
B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129
0.872 0.872
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR

YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.728 0.728
PAX7
M00346_2.00
Homo sapiens
NGTYAYGSHN

NDSCRTRACN
PBM
Barrera et al.(2016)
PAX7_REF
0.720 0.720
sv
M01302_2.00
Drosophila melanogaster
NNNSCRBRDM

KHYVYGSNNN
PBM
Lambert et al.(2019)
pTH9773
0.720 0.720
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN

NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.720 0.720
sv
M03949_2.00
Drosophila melanogaster
NBCRNYSAWGCGTGACS

SGTCACGCWTSRNYGVN
SELEX
Nitta et al.(2015)
sv_1
0.720 0.720
sv
M06438_2.00
Drosophila melanogaster
RNYSRDSCGTRACNN

NNGTYACGSHYSRNY
B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561
0.720 0.720
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN

NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.712 0.712
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN

NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.712 0.712
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN

NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.712 0.712
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC

GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.712 0.712
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC

GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.712 0.712
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN

NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.712 0.712
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC

GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.712 0.712
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM

KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.712 0.712
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG

CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.712 0.712
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC

GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.712 0.712
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM

KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.712 0.712
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN

NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.712 0.712
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC

GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.712 0.712
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB

VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.712 0.712
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH

DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.712 0.712
PAX5
M11210_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.712 0.712
PAX5
M11211_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.712 0.712
PAX5
M11212_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.712 0.712
PAX7
M00345_2.00
Homo sapiens
NSGTCACGSN

NSCGTGACSN
PBM
Barrera et al.(2016)
PAX7_P112L
0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000013300 Paired box 37 161
ENSCSAVP00000013301 Paired box 31 155

Links

Other Paired box family TFs
Other Ciona savignyi TFs

412 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGABI2DRAFT_198669 Agaricus bisporus AGABI2DRAFT_198669 I 0.000
AB08549.1 Alternaria brassicicola AB08549.1 I 0.000
BAUCODRAFT_43903 Baudoinia compniacensis BAUCODRAFT_43903 I 0.000
COCSADRAFT_113317 Bipolaris sorokiniana COCSADRAFT_113317 I 0.000
COCCADRAFT_103330 Bipolaris zeicola COCCADRAFT_103330 I 0.000
Bcin02g08650 Botrytis cinerea Bcin02g08650 I 0.000
PV04_04928 Capronia semiimmersa PV04_04928 I 0.000
CTHT_0048700 Chaetomium thermophilum CTHT_0048700 I 0.000
A1O7_04357 Cladophialophora yegresii A1O7_04357 I 0.000
CFIO01_05828 Colletotrichum fioriniae CFIO01_05828 I 0.000
CGGC5_7223 Colletotrichum gloeosporioides CGGC5_7223 I 0.000
GLRG_11373 Colletotrichum graminicola GLRG_11373 I 0.000
Cob_02770 Colletotrichum orbiculare Cob_02770 I 0.000
CSUB01_09107 Colletotrichum sublineola CSUB01_09107 I 0.000
CC1G_08281 Coprinopsis cinerea CC1G_08281 I 0.000
HMPREF1541_09317 Cyphellophora europaea HMPREF1541_09317 I 0.000
DACRYDRAFT_23137 Dacryopinax sp DACRYDRAFT_23137 I 0.000
H072_552 Dactylellina haptotyla H072_552 I 0.000
DOTSEDRAFT_73261 Dothistroma septosporum DOTSEDRAFT_73261 I 0.000
DRE_02870 Drechslerella stenobrocha DRE_02870 I 0.000
EPUS_05314 Endocarpon pusillum EPUS_05314 I 0.000
PV06_04293 Exophiala oligosperma PV06_04293 I 0.000
PV11_04205 Exophiala sideris PV11_04205 I 0.000
PV08_10336 Exophiala spinifera PV08_10336 I 0.000
NechaG103979 Fusarium solani NechaG103979 I 0.000
GALMADRAFT_118766 Galerina marginata GALMADRAFT_118766 I 0.000
GALMADRAFT_924624 Galerina marginata GALMADRAFT_924624 N 0.000
GALMADRAFT_439138 Galerina marginata GALMADRAFT_439138 N 0.000
GLOTRDRAFT_119791 Gloeophyllum trabeum GLOTRDRAFT_119791 I 0.000
CMQ_24 Grosmannia clavigera CMQ_24 I 0.000
M413DRAFT_446777 Hebeloma cylindrosporum M413DRAFT_446777 I 0.000
M413DRAFT_349844 Hebeloma cylindrosporum M413DRAFT_349844 N 0.000
HETIRDRAFT_380701 Heterobasidion irregulare HETIRDRAFT_380701 N 0.000
JAAARDRAFT_55946 Jaapia argillacea JAAARDRAFT_55946 I 0.000
K443DRAFT_103561 Laccaria amethystina K443DRAFT_103561 N 0.000
LACBIDRAFT_300067 Laccaria bicolor LACBIDRAFT_300067 I 0.000
LEMA_P008300.1 Leptosphaeria maculans LEMA_P008300.1 I 0.000
MPH_05091 Macrophomina phaseolina MPH_05091 I 0.000
MGG_03516 Magnaporthe oryzae MGG_03516 I 0.000
MAPG_11530 Magnaporthe poae MAPG_11530 I 0.000
MPER_08472 Moniliophthora perniciosa MPER_08472 N 0.000
Moror_15941 Moniliophthora roreri Moror_15941 N 0.000
estExt_fgeneshMC_pg.C_50620 Mucor circinelloides estExt_fgeneshMC_pg.C_50620 N 0.000
e_gw1.2.1997.1 Mucor circinelloides e_gw1.2.1997.1 N 0.000
gw1.1.2477.1 Mucor circinelloides gw1.1.2477.1 N 0.000
estExt_fgenesh1_pm.C_sca_3_chr4_2_00056 Nectria haematococca estExt_fgenesh1_pm.C_sca_3_chr4_2_00056 I 0.000
UCRNP2_5191 Neofusicoccum parvum UCRNP2_5191 I 0.000
rrg-2 Neurospora crassa NCU02413 I 0.000
e_gw1.42.11.1 Neurospora discreta e_gw1.42.11.1 I 0.000
NEUTE1DRAFT_67259 Neurospora tetrasperma NEUTE1DRAFT_67259 I 0.000
HPODL_02729 Ogataea parapolymorpha HPODL_02729 I 0.000
PAXRUDRAFT_831203 Paxillus rubicundulus PAXRUDRAFT_831203 I 0.000
PHACADRAFT_119777 Phanerochaete carnosa PHACADRAFT_119777 I 0.000
PHLGIDRAFT_123599 Phlebiopsis gigantea PHLGIDRAFT_123599 I 0.000
fgeneshPB_pg.42__109 Phycomyces blakesleeanus fgeneshPB_pg.42__109 N 0.000
estExt_fgeneshPB_pg.C_220020 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_220020 N 0.000
M404DRAFT_143892 Pisolithus tinctorius M404DRAFT_143892 I 0.000
M404DRAFT_42467 Pisolithus tinctorius M404DRAFT_42467 I 0.000
PLEOSDRAFT_1087686 Pleurotus ostreatus PLEOSDRAFT_1087686 I 0.000
GMDG_07418 Pseudogymnoascus destructans GMDG_07418 I 0.000
V499_02747 Pseudogymnoascus pannorum V499_02747 I 0.000
PAN0_006c2853 Pseudozyma antarctica PAN0_006c2853 I 0.000
PSEUBRA_SCAF7g04459 Pseudozyma brasiliensis PSEUBRA_SCAF7g04459 I 0.000
PFL1_05463 Pseudozyma flocculosa PFL1_05463 N 0.000
PHSY_006817 Pseudozyma hubeiensis PHSY_006817 I 0.000
PTT_13287 Pyrenophora teres PTT_13287 I 0.000
V565_131540 Rhizoctonia solani V565_131540 I 0.000
GLOINDRAFT_14063 Rhizophagus irregularis GLOINDRAFT_14063 I 0.000
RO3G_11609 Rhizopus oryzae RO3G_11609 N 0.000
RO3G_15453 Rhizopus oryzae RO3G_15453 N 0.000
RO3G_02909 Rhizopus oryzae RO3G_02909 N 0.000
RHTO_03255 Rhodosporidium toruloides RHTO_03255 I 0.000
O9G_001789 Rozella allomycis O9G_001789 N 0.000
SCHCODRAFT_65208 Schizophyllum commune SCHCODRAFT_65208 I 0.000
SPOG_04721 Schizosaccharomyces cryophilus SPOG_04721 I 0.000
SOCG_03169 Schizosaccharomyces octosporus SOCG_03169 I 0.000
prr1 Schizosaccharomyces pombe SPAC8C9.14 I 0.000
SBOR_2785 Sclerotinia borealis SBOR_2785 I 0.000
M408DRAFT_138020 Serendipita vermifera M408DRAFT_138020 I 0.000
M422DRAFT_252354 Sphaerobolus stellatus M422DRAFT_252354 I 0.000
SPPG_00235 Spizellomyces punctatus SPPG_00235 I 0.000
sr14344 Sporisorium reilianum sr14344 N 0.000
estExt_fgenesh1_pg.C_60347 Sporobolomyces roseus estExt_fgenesh1_pg.C_60347 I 0.000
CY34DRAFT_809035 Suillus luteus CY34DRAFT_809035 I 0.000
THITE_2116663 Thielavia terrestris THITE_2116663 I 0.000
BN946_scf184843.g9 Trametes cinnabarina BN946_scf184843.g9 I 0.000
M407DRAFT_35594 Tulasnella calospora M407DRAFT_35594 I 0.000
M407DRAFT_88338 Tulasnella calospora M407DRAFT_88338 I 0.000
UHOR_05198 Ustilago hordei UHOR_05198 I 0.000
PV09_03463 Verruconis gallopava PV09_03463 I 0.000
VDBG_03345 Verticillium albo atrum VDBG_03345 I 0.000
VDBG_03345 Verticillium alfalfae VDBG_03345 I 0.000