ENSGMOG00000003366 (Gadus morhua)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 ENSGMOG00000003366 T311661_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX7
M00346_2.00
Homo sapiens
NGTYAYGSHN

NDSCRTRACN
PBM
Barrera et al.(2016)
PAX7_REF
0.960 0.960
PAX7
M00345_2.00
Homo sapiens
NSGTCACGSN

NSCGTGACSN
PBM
Barrera et al.(2016)
PAX7_P112L
0.952 0.952
PAX1
M03442_2.00
Homo sapiens
DBCANTSAWGCGTGACS

SGTCACGCWTSANTGVH
SELEX
Jolma et al.(2013)
PAX1_1
0.752 0.752
PAX9
M03444_2.00
Homo sapiens
NKCANTSAWGCGTGACS

SGTCACGCWTSANTGMN
SELEX
Jolma et al.(2013)
PAX9_1
0.752 0.752
PAX1
M05687_2.00
Homo sapiens
BCRNTSRWGCGTGACSN

NSGTCACGCWYSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX
0.752 0.752
PAX9
M05689_2.00
Homo sapiens
BHRNYSRDSCGTRACSN

NSGTYACGSHYSRNYDV
SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX
0.752 0.752
PAX1
M11207_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX1_B
0.752 0.752
PAX1
M05688_2.00
Homo sapiens
BCRNTSAWGCGTGACSN

NSGTCACGCWTSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX
0.752 0.752
PAX9
M05690_2.00
Homo sapiens
BCRNTSAWSCGYGACNN

NNGTCRCGSWTSANYGV
SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX
0.752 0.752
pax9
M11204_2.00
Danio rerio Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX9_B
0.744 0.744
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN

NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.720 0.720
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN

NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.720 0.720
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN

NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.720 0.720
Poxm
M03944_2.00
Drosophila melanogaster
CAVTCAWGCGTGACR

YGTCACGCWTGABTG
SELEX
Nitta et al.(2015)
Poxm_1
0.720 0.720
Poxm
M03945_2.00
Drosophila melanogaster
NYSAWGCRTRACS

SGTYAYGCWTSRN
SELEX
Nitta et al.(2015)
Poxm_2
0.720 0.720
Poxm
M06436_2.00
Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA

TCAYGSNYNDNBKNNNNNN
B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129
0.720 0.720
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN

NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.720 0.720
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC

GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.720 0.720
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC

GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.720 0.720
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN

NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.720 0.720
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC

GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.720 0.720
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM

KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.720 0.720
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG

CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.720 0.720
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC

GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.720 0.720
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM

KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.720 0.720
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN

NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.720 0.720
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC

GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.720 0.720
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB

VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.720 0.720
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH

DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.720 0.720
PAX5
M11210_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.720 0.720
PAX5
M11211_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.720 0.720
PAX5
M11212_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.720 0.720
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR

YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.712 0.712
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN

NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.704 0.704
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM

KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.704 0.704
PAX8
M11205_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.704 0.704
PAX8
M11206_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.704 0.704
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN

NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.704 0.704
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGMOP00000003568 Paired box 35 165

Links

Other Paired box family TFs
Other Gadus morhua TFs

419 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000006980 Ailuropoda melanoleuca ENSAMEG00000006980 I 0.000
ENSAMEG00000015432 Ailuropoda melanoleuca ENSAMEG00000015432 I 0.000
ENSBTAP00000014826-D2 Bos grunniens ENSBTAP00000014826-D2 I 0.000
ZSCAN29 Bos taurus ENSBTAG00000014478 I 0.000
ZSCAN29 Callithrix jacchus ENSCJAG00000002903 I 0.000
ZKSCAN2 Callithrix jacchus ENSCJAG00000020749 I 0.000
ZSCAN29 Canis familiaris ENSCAFG00000012056 I 0.000
ZKSCAN2 Canis familiaris ENSCAFG00000017477 I 0.000
ZSCAN29 Cavia porcellus ENSCPOG00000001782 I 0.000
ENSCSAG00000009079 Chlorocebus sabaeus ENSCSAG00000009079 I 0.000
ENSCSAG00000006472 Chlorocebus sabaeus ENSCSAG00000006472 I 0.000
ZSCAN29 Choloepus hoffmanni ENSCHOG00000009706 I 0.000
ZSCAN29 Dasypus novemcinctus ENSDNOG00000018427 I 0.000
ZKSCAN2 Dasypus novemcinctus ENSDNOG00000044830 I 0.000
ZSCAN29 Echinops telfairi ENSETEG00000019734 I 0.000
ZSCAN29 Equus caballus ENSECAG00000012289 I 0.000
ZSCAN29 Felis catus ENSFCAG00000002712 I 0.000
ZKSCAN2 Gorilla gorilla ENSGGOG00000004769 I 0.000
ZSCAN29 Gorilla gorilla ENSGGOG00000002879 I 0.000
ZKSCAN2 Homo sapiens ENSG00000155592 D 0.000
ZSCAN29 Homo sapiens ENSG00000140265 D 0.000
ENSSTOG00000000417 Ictidomys tridecemlineatus ENSSTOG00000000417 I 0.000
ENSSTOG00000006892 Ictidomys tridecemlineatus ENSSTOG00000006892 I 0.000
ZKSCAN2 Loxodonta africana ENSLAFG00000007287 I 0.000
ZSCAN29 Loxodonta africana ENSLAFG00000001195 I 0.000
ENSP00000331626 Macaca fascicularis ENSP00000331626 I 0.000
ENSP00000380174 Macaca fascicularis ENSP00000380174 I 0.000
ZSCAN29 Macaca mulatta ENSMMUG00000017070 I 0.000
ENSMICG00000001583 Microcebus murinus ENSMICG00000001583 I 0.000
ZSCAN29 Microcebus murinus ENSMICG00000010051 I 0.000
ZSCAN29 Monodelphis domestica ENSMODG00000017820 I 0.000
ENSMPUG00000010249 Mustela putorius furo ENSMPUG00000010249 I 0.000
Zscan29 Mus musculus ENSMUSG00000050619 I 0.000
Zkscan2 Mus musculus ENSMUSG00000030757 I 0.000
Myotis_brandtii_ZSCAN29_10025802 Myotis brandtii Myotis_brandtii_ZSCAN29_10025802 I 0.000
ENSNLEG00000011727 Nomascus leucogenys ENSNLEG00000011727 I 0.000
ENSNLEG00000004938 Nomascus leucogenys ENSNLEG00000004938 I 0.000
ZSCAN29 Otolemur garnettii ENSOGAG00000000128 I 0.000
ZSCAN29 Pan troglodytes ENSPTRG00000006992 I 0.000
ZKSCAN2 Pan troglodytes ENSPTRG00000007906 I 0.000
ENSPANG00000018475 Papio anubis ENSPANG00000018475 I 0.000
ENSPANG00000007624 Papio anubis ENSPANG00000007624 I 0.000
ENSPPYG00000006412 Pongo abelii ENSPPYG00000006412 I 0.000
ENSPPYG00000007207 Pongo abelii ENSPPYG00000007207 I 0.000
ZSCAN29 Procavia capensis ENSPCAG00000010380 I 0.000
ZSCAN29 Pteropus vampyrus ENSPVAG00000008846 I 0.000
Zscan29 Rattus norvegicus ENSRNOG00000012419 I 0.000
Zkscan2 Rattus norvegicus ENSRNOG00000024245 I 0.000
ENSSHAG00000012821 Sarcophilus harrisii ENSSHAG00000012821 I 0.000
ZKSCAN2 Sorex araneus ENSSARG00000003883 I 0.000
ENSSSCG00000007824 Sus scrofa ENSSSCG00000007824 I 0.000
ZKSCAN2 Sus scrofa ENSSSCG00000007823 I 0.000
ENSSSCG00000004709 Sus scrofa ENSSSCG00000004709 I 0.000
ENSTSYG00000009836 Tarsius syrichta ENSTSYG00000009836 I 0.000
ENSTSYG00000004828 Tarsius syrichta ENSTSYG00000004828 I 0.000
ZSCAN29 Tupaia belangeri ENSTBEG00000010257 I 0.000
ZKSCAN2 Tursiops truncatus ENSTTRG00000015263 I 0.000
ZSCAN29 Tursiops truncatus ENSTTRG00000016234 I 0.000