CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSONIG00000005161
(
Oreochromis niloticus
)
Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00292 (PAX)
IPR001523
ENSONIG00000005161
T311735_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR
YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.867
0.867
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN
NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.867
0.867
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.867
0.867
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.867
0.867
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.867
0.867
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.867
0.867
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.867
0.867
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.867
0.867
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.867
0.867
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.867
0.867
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG
CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.867
0.867
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.867
0.867
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.867
0.867
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.867
0.867
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.867
0.867
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.867
0.867
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.867
0.867
PAX5
M11210_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.867
0.867
PAX5
M11211_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.867
0.867
PAX5
M11212_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.867
0.867
sv
M01302_2.00
Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN
PBM
Lambert et al.(2019)
pTH9773
0.844
0.844
sv
M03949_2.00
Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN
SELEX
Nitta et al.(2015)
sv_1
0.844
0.844
sv
M06438_2.00
Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY
B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561
0.844
0.844
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.800
0.800
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.800
0.800
PAX8
M11205_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.800
0.800
PAX8
M11206_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.800
0.800
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.800
0.800
PAX1
M03442_2.00
Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH
SELEX
Jolma et al.(2013)
PAX1_1
0.733
0.733
PAX9
M03444_2.00
Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN
SELEX
Jolma et al.(2013)
PAX9_1
0.733
0.733
PAX1
M05687_2.00
Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX
0.733
0.733
PAX9
M05689_2.00
Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV
SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX
0.733
0.733
PAX1
M11207_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX1_B
0.733
0.733
pax9
M11204_2.00
Danio rerio
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX9_B
0.733
0.733
PAX1
M05688_2.00
Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX
0.733
0.733
PAX9
M05690_2.00
Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV
SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX
0.733
0.733
Poxm
M03944_2.00
Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG
SELEX
Nitta et al.(2015)
Poxm_1
0.711
0.711
Poxm
M03945_2.00
Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN
SELEX
Nitta et al.(2015)
Poxm_2
0.711
0.711
Poxn
M03946_2.00
Drosophila melanogaster
DGCGTGACSGTCACGSY
RSCGTGACSGTCACGCH
SELEX
Nitta et al.(2015)
Poxn_1
0.711
0.711
Poxn
M03947_2.00
Drosophila melanogaster
RSCGKGACSGTTMCGSW
WSCGKAACSGTCMCGSY
SELEX
Nitta et al.(2015)
Poxn_2
0.711
0.711
Poxn
M03948_2.00
Drosophila melanogaster
NCGTTCCGGAACGD
HCGTTCCGGAACGN
SELEX
Nitta et al.(2015)
Poxn_3
0.711
0.711
Poxm
M06436_2.00
Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN
B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129
0.711
0.711
Poxn
M06437_2.00
Drosophila melanogaster
RSCGTGACG
CGTCACGSY
B1H
Zhu et al.(2011)
Poxn_SOLEXA_5_FBgn0003130
0.711
0.711
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSONIP00000006486
Paired box
15
59
RHGGVNQLGGVFINGRPLPHVVRQRIVELAQQGVRPCEISRRLRV
Links
Other
Paired box
family TFs
Other
Oreochromis niloticus
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
pax2.L
Xenopus laevis
XB-GENE-486805
I
0.889
ENSLACG00000013159
Latimeria chalumnae
ENSLACG00000013159
I
0.867
Pax5
Mus musculus
ENSMUSG00000014030
D
0.867
PAX5
Homo sapiens
ENSG00000196092
D
0.867
PAX5
Callithrix jacchus
ENSCJAG00000010379
I
0.867
GL18401
Drosophila persimilis
FBgn0156002
I
0.844
GI14046
Drosophila mojavensis
FBgn0136800
I
0.844
MESCA003563
Megaselia scalaris
MESCA003563
I
0.844
GK13586
Drosophila willistoni
FBgn0215594
I
0.844
GJ13730
Drosophila virilis
FBgn0200951
I
0.844
GH23966
Drosophila grimshawi
FBgn0131423
I
0.844
spa-sv
Drosophila pseudoobscura
FBgn0249275
I
0.844
ACHR009800
Anopheles christyi
ACHR009800
I
0.800
AMIN002123
Anopheles minimus
AMIN002123
I
0.800
ACUA027429
Anopheles culicifacies
ACUA027429
I
0.800
PTRK_0001603600
Parastrongyloides trichosuri
PTRK_0001603600
I
0.800
AFUN011579
Anopheles funestus
AFUN011579
I
0.800
AMEC016969
Anopheles melas
AMEC016969
I
0.800
AMEM003247
Anopheles merus
AMEM003247
I
0.800
SSTP_0000522800
Strongyloides stercoralis
SSTP_0000522800
I
0.800
SVE_0227200
Strongyloides venezuelensis
SVE_0227200
I
0.800
SPAL_0000372000
Strongyloides papillosus
SPAL_0000372000
I
0.800
AGAP000057
Anopheles gambiae
AGAP000057
I
0.800
Pax6
Mus musculus
ENSMUSG00000027168
D
0.786
augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0
I
0.765
HPLM_0000491501
Haemonchus placei
HPLM_0000491501
I
0.756
OESDEN_18680
Oesophagostomum dentatum
OESDEN_18680
I
0.750
BGLB007764
Biomphalaria glabrata
BGLB007764
I
0.733
CLEC012019
Cimex lectularius
CLEC012019
I
0.733
Gfo_R012945
Geospiza fortis
Gfo_R012945
I
0.733
pax8
Tetraodon nigroviridis
ENSTNIG00000009029
I
0.733
PAX6
Homo sapiens
ENSG00000007372
D
0.714
SVUK_0001011501
Strongylus vulgaris
SVUK_0001011501
I
0.711
AFUN002668
Anopheles funestus
AFUN002668
I
0.711
ENSPMAG00000010414
Petromyzon marinus
ENSPMAG00000010414
I
0.711
ANCCAN_00243
Ancylostoma caninum
ANCCAN_00243
I
0.711
L596_g12356
Steinernema carpocapsae
L596_g12356
I
0.711
PAX5
Tursiops truncatus
ENSTTRG00000006049
I
0.709
PAX5
Tupaia belangeri
ENSTBEG00000007983
I
0.709
ENSTSYG00000008085
Tarsius syrichta
ENSTSYG00000008085
I
0.709