ENSONIG00000005161 (Oreochromis niloticus)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 ENSONIG00000005161 T311735_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR

YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.867 0.867
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN

NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.867 0.867
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN

NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.867 0.867
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN

NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.867 0.867
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN

NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.867 0.867
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC

GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.867 0.867
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC

GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.867 0.867
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN

NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.867 0.867
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC

GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.867 0.867
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM

KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.867 0.867
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG

CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.867 0.867
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC

GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.867 0.867
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM

KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.867 0.867
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN

NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.867 0.867
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC

GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.867 0.867
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB

VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.867 0.867
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH

DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.867 0.867
PAX5
M11210_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.867 0.867
PAX5
M11211_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.867 0.867
PAX5
M11212_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.867 0.867
sv
M01302_2.00
Drosophila melanogaster
NNNSCRBRDM

KHYVYGSNNN
PBM
Lambert et al.(2019)
pTH9773
0.844 0.844
sv
M03949_2.00
Drosophila melanogaster
NBCRNYSAWGCGTGACS

SGTCACGCWTSRNYGVN
SELEX
Nitta et al.(2015)
sv_1
0.844 0.844
sv
M06438_2.00
Drosophila melanogaster
RNYSRDSCGTRACNN

NNGTYACGSHYSRNY
B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561
0.844 0.844
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN

NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.800 0.800
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM

KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.800 0.800
PAX8
M11205_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.800 0.800
PAX8
M11206_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.800 0.800
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN

NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.800 0.800
PAX1
M03442_2.00
Homo sapiens
DBCANTSAWGCGTGACS

SGTCACGCWTSANTGVH
SELEX
Jolma et al.(2013)
PAX1_1
0.733 0.733
PAX9
M03444_2.00
Homo sapiens
NKCANTSAWGCGTGACS

SGTCACGCWTSANTGMN
SELEX
Jolma et al.(2013)
PAX9_1
0.733 0.733
PAX1
M05687_2.00
Homo sapiens
BCRNTSRWGCGTGACSN

NSGTCACGCWYSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX
0.733 0.733
PAX9
M05689_2.00
Homo sapiens
BHRNYSRDSCGTRACSN

NSGTYACGSHYSRNYDV
SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX
0.733 0.733
PAX1
M11207_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX1_B
0.733 0.733
pax9
M11204_2.00
Danio rerio Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX9_B
0.733 0.733
PAX1
M05688_2.00
Homo sapiens
BCRNTSAWGCGTGACSN

NSGTCACGCWTSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX
0.733 0.733
PAX9
M05690_2.00
Homo sapiens
BCRNTSAWSCGYGACNN

NNGTCRCGSWTSANYGV
SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX
0.733 0.733
Poxm
M03944_2.00
Drosophila melanogaster
CAVTCAWGCGTGACR

YGTCACGCWTGABTG
SELEX
Nitta et al.(2015)
Poxm_1
0.711 0.711
Poxm
M03945_2.00
Drosophila melanogaster
NYSAWGCRTRACS

SGTYAYGCWTSRN
SELEX
Nitta et al.(2015)
Poxm_2
0.711 0.711
Poxn
M03946_2.00
Drosophila melanogaster
DGCGTGACSGTCACGSY

RSCGTGACSGTCACGCH
SELEX
Nitta et al.(2015)
Poxn_1
0.711 0.711
Poxn
M03947_2.00
Drosophila melanogaster
RSCGKGACSGTTMCGSW

WSCGKAACSGTCMCGSY
SELEX
Nitta et al.(2015)
Poxn_2
0.711 0.711
Poxn
M03948_2.00
Drosophila melanogaster
NCGTTCCGGAACGD

HCGTTCCGGAACGN
SELEX
Nitta et al.(2015)
Poxn_3
0.711 0.711
Poxm
M06436_2.00
Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA

TCAYGSNYNDNBKNNNNNN
B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129
0.711 0.711
Poxn
M06437_2.00
Drosophila melanogaster
RSCGTGACG

CGTCACGSY
B1H
Zhu et al.(2011)
Poxn_SOLEXA_5_FBgn0003130
0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSONIP00000006486 Paired box 15 59

Links

Other Paired box family TFs
Other Oreochromis niloticus TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
pax2.L Xenopus laevis XB-GENE-486805 I 0.889
ENSLACG00000013159 Latimeria chalumnae ENSLACG00000013159 I 0.867
Pax5 Mus musculus ENSMUSG00000014030 D 0.867
PAX5 Homo sapiens ENSG00000196092 D 0.867
PAX5 Callithrix jacchus ENSCJAG00000010379 I 0.867
GL18401 Drosophila persimilis FBgn0156002 I 0.844
GI14046 Drosophila mojavensis FBgn0136800 I 0.844
MESCA003563 Megaselia scalaris MESCA003563 I 0.844
GK13586 Drosophila willistoni FBgn0215594 I 0.844
GJ13730 Drosophila virilis FBgn0200951 I 0.844
GH23966 Drosophila grimshawi FBgn0131423 I 0.844
spa-sv Drosophila pseudoobscura FBgn0249275 I 0.844
ACHR009800 Anopheles christyi ACHR009800 I 0.800
AMIN002123 Anopheles minimus AMIN002123 I 0.800
ACUA027429 Anopheles culicifacies ACUA027429 I 0.800
PTRK_0001603600 Parastrongyloides trichosuri PTRK_0001603600 I 0.800
AFUN011579 Anopheles funestus AFUN011579 I 0.800
AMEC016969 Anopheles melas AMEC016969 I 0.800
AMEM003247 Anopheles merus AMEM003247 I 0.800
SSTP_0000522800 Strongyloides stercoralis SSTP_0000522800 I 0.800
SVE_0227200 Strongyloides venezuelensis SVE_0227200 I 0.800
SPAL_0000372000 Strongyloides papillosus SPAL_0000372000 I 0.800
AGAP000057 Anopheles gambiae AGAP000057 I 0.800
Pax6 Mus musculus ENSMUSG00000027168 D 0.786
augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0 I 0.765
HPLM_0000491501 Haemonchus placei HPLM_0000491501 I 0.756
OESDEN_18680 Oesophagostomum dentatum OESDEN_18680 I 0.750
BGLB007764 Biomphalaria glabrata BGLB007764 I 0.733
CLEC012019 Cimex lectularius CLEC012019 I 0.733
Gfo_R012945 Geospiza fortis Gfo_R012945 I 0.733
pax8 Tetraodon nigroviridis ENSTNIG00000009029 I 0.733
PAX6 Homo sapiens ENSG00000007372 D 0.714
SVUK_0001011501 Strongylus vulgaris SVUK_0001011501 I 0.711
AFUN002668 Anopheles funestus AFUN002668 I 0.711
ENSPMAG00000010414 Petromyzon marinus ENSPMAG00000010414 I 0.711
ANCCAN_00243 Ancylostoma caninum ANCCAN_00243 I 0.711
L596_g12356 Steinernema carpocapsae L596_g12356 I 0.711
PAX5 Tursiops truncatus ENSTTRG00000006049 I 0.709
PAX5 Tupaia belangeri ENSTBEG00000007983 I 0.709
ENSTSYG00000008085 Tarsius syrichta ENSTSYG00000008085 I 0.709