ENSSHAG00000017556 (Sarcophilus harrisii)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 ENSSHAG00000017556 T311813_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX1
M03442_2.00
Homo sapiens
DBCANTSAWGCGTGACS

SGTCACGCWTSANTGVH
SELEX
Jolma et al.(2013)
PAX1_1
1.000 1.000
PAX1
M05687_2.00
Homo sapiens
BCRNTSRWGCGTGACSN

NSGTCACGCWYSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX
1.000 1.000
PAX1
M11207_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX1_B
1.000 1.000
PAX1
M05688_2.00
Homo sapiens
BCRNTSAWGCGTGACSN

NSGTCACGCWTSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX
1.000 1.000
PAX9
M03444_2.00
Homo sapiens
NKCANTSAWGCGTGACS

SGTCACGCWTSANTGMN
SELEX
Jolma et al.(2013)
PAX9_1
0.960 0.960
PAX9
M05689_2.00
Homo sapiens
BHRNYSRDSCGTRACSN

NSGTYACGSHYSRNYDV
SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX
0.960 0.960
PAX9
M05690_2.00
Homo sapiens
BCRNTSAWSCGYGACNN

NNGTCRCGSWTSANYGV
SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX
0.960 0.960
pax9
M11204_2.00
Danio rerio Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX9_B
0.952 0.952
Poxm
M03944_2.00
Drosophila melanogaster
CAVTCAWGCGTGACR

YGTCACGCWTGABTG
SELEX
Nitta et al.(2015)
Poxm_1
0.880 0.880
Poxm
M03945_2.00
Drosophila melanogaster
NYSAWGCRTRACS

SGTYAYGCWTSRN
SELEX
Nitta et al.(2015)
Poxm_2
0.880 0.880
Poxm
M06436_2.00
Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA

TCAYGSNYNDNBKNNNNNN
B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129
0.880 0.880
PAX7
M00346_2.00
Homo sapiens
NGTYAYGSHN

NDSCRTRACN
PBM
Barrera et al.(2016)
PAX7_REF
0.752 0.752
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR

YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.744 0.744
PAX7
M00345_2.00
Homo sapiens
NSGTCACGSN

NSCGTGACSN
PBM
Barrera et al.(2016)
PAX7_P112L
0.744 0.744
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN

NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.736 0.736
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN

NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.736 0.736
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN

NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.736 0.736
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN

NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.736 0.736
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC

GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.736 0.736
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC

GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.736 0.736
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN

NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.736 0.736
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC

GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.736 0.736
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM

KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.736 0.736
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG

CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.736 0.736
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC

GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.736 0.736
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM

KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.736 0.736
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN

NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.736 0.736
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC

GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.736 0.736
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB

VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.736 0.736
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH

DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.736 0.736
PAX5
M11210_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.736 0.736
PAX5
M11211_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.736 0.736
PAX5
M11212_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.736 0.736
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN

NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.728 0.728
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM

KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.728 0.728
PAX8
M11205_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.728 0.728
PAX8
M11206_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.728 0.728
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN

NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.728 0.728
sv
M01302_2.00
Drosophila melanogaster
NNNSCRBRDM

KHYVYGSNNN
PBM
Lambert et al.(2019)
pTH9773
0.712 0.712
sv
M03949_2.00
Drosophila melanogaster
NBCRNYSAWGCGTGACS

SGTCACGCWTSRNYGVN
SELEX
Nitta et al.(2015)
sv_1
0.712 0.712
sv
M06438_2.00
Drosophila melanogaster
RNYSRDSCGTRACNN

NNGTYACGSHYSRNY
B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561
0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSHAP00000020701 Paired box 95 219

Links

Other Paired box family TFs
Other Sarcophilus harrisii TFs

513 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MYB118 Arabidopsis thaliana AT3G27785 D 0.000
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I 0.000
TCM_012087 Theobroma cacao TCM_012087 I 0.000
TCM_016909 Theobroma cacao TCM_016909 I 0.000
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.000
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.000
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.000
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.000
Traes_7DS_E27ECBC6E Triticum aestivum Traes_7DS_E27ECBC6E I 0.000
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.000
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.000
Ca_17294 Cicer arietinum Ca_17294 I 0.000
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.000
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.000
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.000
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.000
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.000
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.000
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.000
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.000
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I 0.000
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I 0.000
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.000
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.000
Si039046m.g Setaria italica Si039046m.g I 0.000
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I 0.000
Cla019490 Citrullus lanatus Cla019490 I 0.000
Pm000541 Prunus mume Pm000541 I 0.000
Pm024743 Prunus mume Pm024743 I 0.000
Lus10005864.g Linum usitatissimum Lus10005864.g I 0.000
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.000
Carubv10028458m.g Capsella rubella Carubv10028458m.g I 0.000
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I 0.000
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.000
MDP0000319656 Malus domestica MDP0000319656 I 0.000
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.000
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.000
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.000
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.000
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.000
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.000
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.000
30147.m013937 Ricinus communis 30147.m013937 I 0.000
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.000
MDP0000215359 Malus domestica MDP0000215359 I 0.000
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.000
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.000
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.000
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.000
mg025334m Mimulus guttatus mg025334m I 0.000
mgf024290m Mimulus guttatus mgf024290m I 0.000
Aquca_045_00020 Aquilegia coerulea Aquca_045_00020 I 0.000
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.000
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.000
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.000
Thhalv10016057m.g Eutrema salsugineum Thhalv10016057m.g I 0.000
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.000
GLYMA19G13923 Glycine max GLYMA19G13923 I 0.000
GRMZM2G302549 Zea mays GRMZM2G302549 I 0.000
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.000
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.000
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.000
Bra020346 Brassica rapa Bra020346 I 0.000
GSMUA_Achr6G06490_001 Musa acuminata GSMUA_Achr6G06490_001 I 0.000
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.000
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.000
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.000
Cagra.0891s0081 Capsella grandiflora Cagra.0891s0081 I 0.000
BGIOSGA036541 Oryza indica BGIOSGA036541 I 0.000
Bo2g028290 Brassica oleracea Bo2g028290 I 0.000
Bo3g018490 Brassica oleracea Bo3g018490 I 0.000
Bra006744 Brassica rapa Bra006744 I 0.000
Bra025299 Brassica rapa Bra025299 I 0.000
F775_22212 Aegilops tauschii F775_22212 I 0.000
fgenesh2_kg.277__1__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.277__1__AT5G58850.1 I 0.000
fgenesh2_kg.3__2684__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.3__2684__AT5G58850.1 I 0.000
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.000
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.000
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.000
LPERR12G04190 Leersia perrieri LPERR12G04190 I 0.000
OLONG_008158 Oryza longistaminata OLONG_008158 I 0.000
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.000
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.000
OMERI12G02760 Oryza meridionalis OMERI12G02760 I 0.000
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.000
ONIVA12G04220 Oryza nivara ONIVA12G04220 I 0.000
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.000
OPUNC12G04510 Oryza punctata OPUNC12G04510 I 0.000
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.000
ORGLA12G0042300 Oryza glaberrima ORGLA12G0042300 I 0.000
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.000
OS06G0162700 Oryza sativa OS06G0162700 I 0.000
OGLUM12G05330 Oryza glumaepatula OGLUM12G05330 I 0.000
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.000
OBART12G04500 Oryza barthii OBART12G04500 I 0.000
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.000
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.000
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.000
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.000
OB06G13860 Oryza brachyantha OB06G13860 I 0.000
OBART06G04170 Oryza barthii OBART06G04170 I 0.000
OBART12G04480 Oryza barthii OBART12G04480 I 0.000
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N 0.000
PDK_20s1782461g001 Phoenix dactylifera PDK_20s1782461g001 N 0.000
SapurV1A.0772s0150 Salix purpurea SapurV1A.0772s0150 N 0.000
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N 0.000
SapurV1A.0041s0840 Salix purpurea SapurV1A.0041s0840 N 0.000
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.000
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N 0.000
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.000
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N 0.000
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N 0.000
chr4.CM0042.120.nd Lotus japonicus chr4.CM0042.120.nd N 0.000
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N 0.000
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N 0.000
PGSC0003DMG400044141 Solanum tuberosum PGSC0003DMG400044141 N 0.000
MTR_5g070020 Medicago truncatula MTR_5g070020 N 0.000
MTR_4g105660 Medicago truncatula MTR_4g105660 N 0.000
MTR_3g463400 Medicago truncatula MTR_3g463400 N 0.000
GSMUA_Achr8G02290_001 Musa acuminata GSMUA_Achr8G02290_001 N 0.000
GSMUA_Achr6G33700_001 Musa acuminata GSMUA_Achr6G33700_001 N 0.000
GSMUA_Achr10G00770_001 Musa acuminata GSMUA_Achr10G00770_001 N 0.000
GLYMA18G07360 Glycine max GLYMA18G07360 N 0.000
GLYMA14G37140 Glycine max GLYMA14G37140 N 0.000
GLYMA02G39070 Glycine max GLYMA02G39070 N 0.000
MYB64 Arabidopsis lyrata fgenesh2_kg.6__1071__AT5G11050.1 N 0.000
POPTR_0001s25710 Populus trichocarpa POPTR_0001s25710 N 0.000
POPTR_0009s04870 Populus trichocarpa POPTR_0009s04870 N 0.000
Solyc06g076840.1 Solanum lycopersicum Solyc06g076840.1 N 0.000
Eucgr.J01929 Eucalyptus grandis Eucgr.J01929 N 0.000
Carubv10003695m.g Capsella rubella Carubv10003695m.g N 0.000
Cagra.1398s0045 Capsella grandiflora Cagra.1398s0045 N 0.000
Bostr.23997s0007 Boechera stricta Bostr.23997s0007 N 0.000
Bostr.20821s0001 Boechera stricta Bostr.20821s0001 N 0.000
Cucsa.146980 Cucumis sativus Cucsa.146980 N 0.000
cassava26674.m1 Manihot esculenta cassava26674.m1 N 0.000
cassava26507.m1 Manihot esculenta cassava26507.m1 N 0.000
29681.m001315 Ricinus communis 29681.m001315 N 0.000
Cla008304 Citrullus lanatus Cla008304 N 0.000
TCM_041651 Theobroma cacao TCM_041651 N 0.000
MYB64 Arabidopsis thaliana AT5G11050 N 0.000