SINV17241 (Solenopsis invicta)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 SINV17241 T312058_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR

YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.719 0.719
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN

NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.719 0.719
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN

NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.719 0.719
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN

NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.719 0.719
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN

NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.719 0.719
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC

GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.719 0.719
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC

GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.719 0.719
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN

NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.719 0.719
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC

GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.719 0.719
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM

KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.719 0.719
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG

CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.719 0.719
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC

GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.719 0.719
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM

KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.719 0.719
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN

NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.719 0.719
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC

GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.719 0.719
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB

VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.719 0.719
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH

DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.719 0.719
PAX5
M11210_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.719 0.719
PAX5
M11211_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.719 0.719
PAX5
M11212_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.719 0.719
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN

NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.702 0.702
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM

KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.702 0.702
PAX8
M11205_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.702 0.702
PAX8
M11206_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.702 0.702
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN

NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SINV17241-PA Paired box 1 121

Links

Other Paired box family TFs
Other Solenopsis invicta TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
M378DRAFT_452363 Amanita muscaria M378DRAFT_452363 I 0.000
CERSUDRAFT_123724 Ceriporiopsis subvermispora CERSUDRAFT_123724 I 0.000
CC1G_14187 Coprinopsis cinerea CC1G_14187 I 0.000
FIBRA_03533 Fibroporia radiculosa FIBRA_03533 I 0.000
FOMPIDRAFT_38053 Fomitopsis pinicola FOMPIDRAFT_38053 N 0.000
GALMADRAFT_249199 Galerina marginata GALMADRAFT_249199 I 0.000
GLOTRDRAFT_21049 Gloeophyllum trabeum GLOTRDRAFT_21049 I 0.000
M413DRAFT_441939 Hebeloma cylindrosporum M413DRAFT_441939 I 0.000
EuGene3000845 Heterobasidion annosum EuGene3000845 I 0.000
HETIRDRAFT_248323 Heterobasidion irregulare HETIRDRAFT_248323 I 0.000
JAAARDRAFT_97104 Jaapia argillacea JAAARDRAFT_97104 I 0.000
K443DRAFT_671198 Laccaria amethystina K443DRAFT_671198 I 0.000
LACBIDRAFT_313819 Laccaria bicolor LACBIDRAFT_313819 I 0.000
Moror_6823 Moniliophthora roreri Moror_6823 I 0.000
PAXRUDRAFT_62501 Paxillus rubicundulus PAXRUDRAFT_62501 I 0.000
PILCRDRAFT_809854 Piloderma croceum PILCRDRAFT_809854 I 0.000
PISMIDRAFT_84092 Pisolithus microcarpus PISMIDRAFT_84092 N 0.000
M404DRAFT_75055 Pisolithus tinctorius M404DRAFT_75055 N 0.000
PLEOSDRAFT_1027210 Pleurotus ostreatus PLEOSDRAFT_1027210 I 0.000
POSPLDRAFT_38779 Postia placenta POSPLDRAFT_38779 N 0.000
SCHCODRAFT_110420 Schizophyllum commune SCHCODRAFT_110420 D 0.000
SCLCIDRAFT_13268 Scleroderma citrinum SCLCIDRAFT_13268 I 0.000
CY34DRAFT_802483 Suillus luteus CY34DRAFT_802483 I 0.000
BN946_scf184775.g25 Trametes cinnabarina BN946_scf184775.g25 I 0.000