YQE_05107 (Dendroctonus ponderosae)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 YQE_05107 T312125_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN

NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.740 0.740
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN

NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.740 0.740
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN

NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.740 0.740
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN

NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.740 0.740
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC

GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.740 0.740
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC

GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.740 0.740
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN

NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.740 0.740
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC

GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.740 0.740
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM

KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.740 0.740
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG

CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.740 0.740
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC

GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.740 0.740
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM

KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.740 0.740
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN

NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.740 0.740
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC

GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.740 0.740
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB

VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.740 0.740
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH

DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.740 0.740
PAX5
M11210_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.740 0.740
PAX5
M11211_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.740 0.740
PAX5
M11212_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.740 0.740
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR

YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.732 0.732
sv
M01302_2.00
Drosophila melanogaster
NNNSCRBRDM

KHYVYGSNNN
PBM
Lambert et al.(2019)
pTH9773
0.707 0.707
sv
M03949_2.00
Drosophila melanogaster
NBCRNYSAWGCGTGACS

SGTCACGCWTSRNYGVN
SELEX
Nitta et al.(2015)
sv_1
0.707 0.707
sv
M06438_2.00
Drosophila melanogaster
RNYSRDSCGTRACNN

NNGTYACGSHYSRNY
B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561
0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENN78424 Paired box 38 160

Links

Other Paired box family TFs
Other Dendroctonus ponderosae TFs

210 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nAv.1.0.1.g05236 Acanthocheilonema viteae nAv.1.0.1.g05236 I 0.772
ACYPI000633 Acyrthosiphon pisum ACYPI000633 I 0.712
ENSAMEG00000010127 Ailuropoda melanoleuca ENSAMEG00000010127 I 0.740
Alligator_sinensis_CCG012866.1 Alligator sinensis Alligator_sinensis_CCG012866.1 I 0.720
ANCCEY_08417 Ancylostoma ceylanicum ANCCEY_08417 I 0.815
ACAC_0001290301 Angiostrongylus cantonensis ACAC_0001290301 I 0.835
PAX5 Anolis carolinensis ENSACAG00000011646 I 0.732
ENSACAG00000011033 Anolis carolinensis ENSACAG00000011033 I 0.740
AATE019182 Anopheles atroparvus AATE019182 I 0.779
ACOM023323 Anopheles coluzzii ACOM023323 I 0.772
AMAM010937 Anopheles maculatus AMAM010937 I 0.780
GB53162 Apis mellifera GB53162 I 0.704
Afo_R005136 Aptenodytes forsteri Afo_R005136 I 0.740
ALUE_0000749601 Ascaris lumbricoides ALUE_0000749601 N 0.764
ASU_08112 Ascaris suum ASU_08112 N 0.764
ENSAMXG00000005158 Astyanax mexicanus ENSAMXG00000005158 I 0.724
ENSAMXG00000009227 Astyanax mexicanus ENSAMXG00000009227 I 0.707
ENSAMXG00000012274 Astyanax mexicanus ENSAMXG00000012274 I 0.728
ACEP24464 Atta cephalotes ACEP24464 I 0.911
ACEP20912 Atta cephalotes ACEP20912 N 0.816
ACEP12359 Atta cephalotes ACEP12359 I 0.707
BGLB007764 Biomphalaria glabrata BGLB007764 I 0.837
BGIBMGA013358 Bombyx mori BGIBMGA013358 I 0.726
BGIBMGA009545 Bombyx mori BGIBMGA009545 I 0.825
BGIBMGA009432 Bombyx mori BGIBMGA009432 I 0.896
ENSP00000350844-D1 Bos grunniens ENSP00000350844-D1 I 0.740
PAX5 Bos taurus ENSBTAG00000012498 I 0.740
Bm14693 Brugia malayi Bm14693 I 0.772
BTMF_0000869901 Brugia timori BTMF_0000869901 N 0.756
Brh_R001926 Buceros rhinoceros Brh_R001926 I 0.740
CBG04481 Caenorhabditis briggsae CBG04481 I 0.756
PAX5 Callithrix jacchus ENSCJAG00000010379 I 0.740
Aan_R002178 Calypte anna Aan_R002178 I 0.740
Cflo_05394--XP_001120031.1_APIME Camponotus floridanus Cflo_05394--XP_001120031.1_APIME I 0.837
PAX5 Canis familiaris ENSCAFG00000002357 I 0.740
CapteG119889 Capitella teleta CapteG119889 I 0.710
PAX5 Cavia porcellus ENSCPOG00000009987 I 0.740
ENSCSAG00000010751 Chlorocebus sabaeus ENSCSAG00000010751 I 0.740
PAX5 Choloepus hoffmanni ENSCHOG00000003521 I 0.740
CLEC008846 Cimex lectularius CLEC008846 I 0.878
CLEC008733 Cimex lectularius CLEC008733 I 0.868
ENSCSAVG00000007987 Ciona savignyi ENSCSAVG00000007987 I 0.811
CGI_10024166 Crassostrea gigas CGI_10024166 I 0.704
KGM_12316 Danaus plexippus KGM_12316 I 0.738
KGM_02181 Danaus plexippus KGM_02181 I 0.917
pax6b Danio rerio ENSDARG00000045936 I 0.915
pax6a Danio rerio ENSDARG00000103379 I 0.957
pax2b Danio rerio ENSDARG00000032578 D 0.732
pax2a Danio rerio ENSDARG00000028148 I 0.748
pax8 Danio rerio ENSDARG00000015879 I 0.707
pax5 Danio rerio ENSDARG00000037383 I 0.712
DAPPUDRAFT_122807 Daphnia pulex DAPPUDRAFT_122807 I 0.887
DAPPUDRAFT_311028 Daphnia pulex DAPPUDRAFT_311028 I 0.707
DAPPUDRAFT_38922 Daphnia pulex DAPPUDRAFT_38922 I 0.981
PAX5 Dasypus novemcinctus ENSDNOG00000035956 I 0.720
YQE_12361 Dendroctonus ponderosae YQE_12361 I 0.715
DILT_0000606101 Diphyllobothrium latum DILT_0000606101 N 0.732
DILT_0000442801 Diphyllobothrium latum DILT_0000442801 I 0.784
Pax5 Dipodomys ordii ENSDORG00000015818 I 0.740
Pax6 Dipodomys ordii ENSDORG00000000254 N 0.705
nDi.2.2.2.g03678 Dirofilaria immitis nDi.2.2.2.g03678 I 0.772
DME_0000186001 Dracunculus medinensis DME_0000186001 N 0.748
GF20618 Drosophila ananassae FBgn0097624 I 0.707
GH23966 Drosophila grimshawi FBgn0131423 I 0.715
GI14046 Drosophila mojavensis FBgn0136800 I 0.715
GL18401 Drosophila persimilis FBgn0156002 I 0.715
spa-sv Drosophila pseudoobscura FBgn0249275 I 0.715
GJ13730 Drosophila virilis FBgn0200951 I 0.715
GK13586 Drosophila willistoni FBgn0215594 I 0.715
ECANG7_07793 Echinococcus canadensis ECANG7_07793 I 0.756
EmuJ_000389800 Echinococcus multilocularis EmuJ_000389800 I 0.744
PAX5 Echinops telfairi ENSETEG00000002360 I 0.740
ECPE_0000273501 Echinostoma caproni ECPE_0000273501 I 0.820
ECPE_0001376401 Echinostoma caproni ECPE_0001376401 I 0.806
EEL_0000889701 Elaeophora elaphi EEL_0000889701 N 0.750
EVEC_0000795701 Enterobius vermicularis EVEC_0000795701 I 0.764
PAX5 Equus caballus ENSECAG00000000551 I 0.740
PAX5 Erinaceus europaeus ENSEEUG00000012531 I 0.740
D915_05709 Fasciola hepatica D915_05709 I 0.821
PAX5 Felis catus ENSFCAG00000001628 I 0.740
ENSFALG00000012983 Ficedula albicollis ENSFALG00000012983 I 0.740
ENSGMOG00000012561 Gadus morhua ENSGMOG00000012561 I 0.728
ENSGMOG00000000463 Gadus morhua ENSGMOG00000000463 I 0.724
Pax-2 Gallus gallus ENSGALG00000005689 I 0.740
Pax5B Gallus gallus ENSGALG00000016431 D 0.740
pax2b Gasterosteus aculeatus ENSGACG00000002432 I 0.732
pax6b Gasterosteus aculeatus ENSGACG00000016030 I 0.864
pax5 Gasterosteus aculeatus ENSGACG00000016112 I 0.707
pax2a Gasterosteus aculeatus ENSGACG00000008391 I 0.732
Gfo_R013093 Geospiza fortis Gfo_R013093 I 0.740
PAX5 Gorilla gorilla ENSGGOG00000003633 I 0.740
HMEL009702 Heliconius melpomene HMEL009702 I 0.868
PAX5 Homo sapiens ENSG00000196092 D 0.740
PAX2 Homo sapiens ENSG00000075891 D 0.740
PAX6 Homo sapiens ENSG00000007372 D 0.914
TTAC_0000709401 Hydatigera taeniaeformis TTAC_0000709401 I 0.760
HDID_0000853801 Hymenolepis diminuta HDID_0000853801 N 0.762
HmN_000735200 Hymenolepis microstoma HmN_000735200 N 0.752
ENSSTOG00000024354 Ictidomys tridecemlineatus ENSSTOG00000024354 I 0.740
ENSLACG00000013159 Latimeria chalumnae ENSLACG00000013159 I 0.740
ENSLOCG00000005490 Lepisosteus oculatus ENSLOCG00000005490 I 0.720
ENSLOCG00000015261 Lepisosteus oculatus ENSLOCG00000015261 I 0.707
ENSLOCG00000012825 Lepisosteus oculatus ENSLOCG00000012825 I 0.732
LDEC008984 Leptinotarsa decemlineata LDEC008984 I 0.943
LDEC006108 Leptinotarsa decemlineata LDEC006108 N 0.730
LDEC012767 Leptinotarsa decemlineata LDEC012767 I 0.713
nLs.2.1.2.g01338 Litomosoides sigmodontis nLs.2.1.2.g01338 N 0.756
LOAG_04187 Loa loa LOAG_04187 N 0.756
PAX2 Loxodonta africana ENSLAFG00000002388 I 0.734
PAX5 Loxodonta africana ENSLAFG00000028851 I 0.740
LCUP015671 Lucilia cuprina LCUP015671 N 0.818
LCUP011945 Lucilia cuprina LCUP011945 I 0.730
LCUP013028 Lucilia cuprina LCUP013028 I 0.927
LLOJ002076 Lutzomyia longipalpis LLOJ002076 I 0.724
ENSP00000350844 Macaca fascicularis ENSP00000350844 I 0.740
ENSMEUG00000011758 Macropus eugenii ENSMEUG00000011758 I 0.778
MESCA003563 Megaselia scalaris MESCA003563 I 0.715
MCINX012239 Melitaea cinxia MCINX012239 I 0.744
snap_masked-nMf.1.1.scaf10496-processed-gene-0.3 Meloidogyne floridensis snap_masked-nMf.1.1.scaf10496-processed-gene-0.3 N 0.726
PAX5 Microcebus murinus ENSMICG00000017679 I 0.740
PAX5 Monodelphis domestica ENSMODG00000002720 I 0.740
ENSMPUG00000006012 Mustela putorius furo ENSMPUG00000006012 I 0.740
Pax5 Mus musculus ENSMUSG00000014030 D 0.740
Pax6 Mus musculus ENSMUSG00000027168 D 0.885
Myotis_brandtii_PAX5_10017827 Myotis brandtii Myotis_brandtii_PAX5_10017827 I 0.740
PAX5 Myotis lucifugus ENSMLUG00000012652 I 0.740
NECAME_04524 Necator americanus NECAME_04524 I 0.760
ENSNLEG00000003664 Nomascus leucogenys ENSNLEG00000003664 I 0.740
PAX5 Ochotona princeps ENSOPRG00000000734 I 0.740
Ocbimv22007526m.g Octopus bimaculoides Ocbimv22007526m.g I 0.721
Ocbimv22011111m.g Octopus bimaculoides Ocbimv22011111m.g I 0.872
OESDEN_18680 Oesophagostomum dentatum OESDEN_18680 I 0.727
OFLC_0001383501 Onchocerca flexuosa OFLC_0001383501 I 0.764
nOo.2.0.1.g04580 Onchocerca ochengi nOo.2.0.1.g04580 I 0.772
WBGene00241130 Onchocerca volvulus WBGene00241130 I 0.772
Ogr18043 Ophisaurus gracilis Ogr18043 I 0.740
ENSONIG00000016065 Oreochromis niloticus ENSONIG00000016065 I 0.732
ENSONIG00000018496 Oreochromis niloticus ENSONIG00000018496 I 0.748
ENSONIG00000008952 Oreochromis niloticus ENSONIG00000008952 I 0.704
ENSONIG00000000205 Oreochromis niloticus ENSONIG00000000205 I 0.707
PAX5 Ornithorhynchus anatinus ENSOANG00000007579 I 0.740
PAX5 Oryctolagus cuniculus ENSOCUG00000012281 I 0.740
pax5 Oryzias latipes ENSORLG00000005326 I 0.704
pax2b Oryzias latipes ENSORLG00000009321 I 0.724
ENSOGAG00000004773 Otolemur garnettii ENSOGAG00000004773 I 0.740
ENSOARG00000011518 Ovis aries ENSOARG00000011518 I 0.740
PAX5 Pan troglodytes ENSPTRG00000020936 I 0.740
ENSPANG00000025475 Papio anubis ENSPANG00000025475 I 0.740
PEQ_0001140301 Parascaris equorum PEQ_0001140301 N 0.744
PHUM217120 Pediculus humanus PHUM217120 I 0.862
ENSPSIG00000003215 Pelodiscus sinensis ENSPSIG00000003215 I 0.720
ENSPFOG00000013202 Poecilia formosa ENSPFOG00000013202 I 0.748
ENSPFOG00000023634 Poecilia formosa ENSPFOG00000023634 N 0.703
ENSPFOG00000019830 Poecilia formosa ENSPFOG00000019830 I 0.707
ENSPFOG00000011719 Poecilia formosa ENSPFOG00000011719 I 0.712
ENSPFOG00000003702 Poecilia formosa ENSPFOG00000003702 I 0.732
Pvit_15554 Pogona vitticeps Pvit_15554 I 0.740
ENSPPYG00000019064 Pongo abelii ENSPPYG00000019064 I 0.740
scaffold478-EXSNAP2012.12 Pristionchus exspectatus scaffold478-EXSNAP2012.12 I 0.728
Ppa-vab-3 Pristionchus pacificus PPA03442 I 0.728
PAX5 Procavia capensis ENSPCAG00000004660 I 0.740
PXEA_0001769401 Protopolystoma xenopodis PXEA_0001769401 N 0.707
PAX5 Pteropus vampyrus ENSPVAG00000000054 I 0.740
Pax5 Rattus norvegicus ENSRNOG00000024729 I 0.740
Pax2 Rattus norvegicus ENSRNOG00000014253 I 0.734
RPRC003362 Rhodnius prolixus RPRC003362 I 0.868
RPRC001429 Rhodnius prolixus RPRC001429 I 0.902
nRc.2.0.1.g00894 Romanomermis culicivorax nRc.2.0.1.g00894 I 0.776
nRc.2.0.1.g30341 Romanomermis culicivorax nRc.2.0.1.g30341 I 0.744
ENSSHAG00000012375 Sarcophilus harrisii ENSSHAG00000012375 I 0.720
SSLN_0001115101 Schistocephalus solidus SSLN_0001115101 I 0.805
SCUD_0000535601 Schistosoma curassoni SCUD_0000535601 I 0.805
A_03128 Schistosoma haematobium A_03128 I 0.805
Sjc_0004220 Schistosoma japonicum Sjc_0004220 I 0.784
SMTD_0001015101 Schistosoma mattheei SMTD_0001015101 N 0.732
SINV17241 Solenopsis invicta SINV17241 I 0.860
SINV11533 Solenopsis invicta SINV11533 I 0.707
SPER_0000208501 Spirometra erinaceieuropaei SPER_0000208501 N 0.789
L596_g12356 Steinernema carpocapsae L596_g12356 I 0.764
L889_g29910 Steinernema feltiae L889_g29910 I 0.756
L893_g1041 Steinernema glaseri L893_g1041 I 0.764
SPU_014539 Strongylocentrotus purpuratus SPU_014539 I 0.724
SPU_006786 Strongylocentrotus purpuratus SPU_006786 I 0.829
ENSSSCG00000005345 Sus scrofa ENSSSCG00000005345 I 0.740
TASK_0000210301 Taenia asiatica TASK_0000210301 I 0.752
TsM_000804100 Taenia solium TsM_000804100 I 0.764
PAX5 Taeniopygia guttata ENSTGUG00000007215 I 0.740
pax2b Takifugu rubripes ENSTRUG00000011987 I 0.732
pax2a Takifugu rubripes ENSTRUG00000008891 I 0.748
pax5 Takifugu rubripes ENSTRUG00000003227 I 0.712
ENSTSYG00000008085 Tarsius syrichta ENSTSYG00000008085 I 0.800
ENSTSYG00000001117 Tarsius syrichta ENSTSYG00000001117 I 0.740
TELCIR_00311 Teladorsagia circumcincta TELCIR_00311 I 0.760
tetur29g01000 Tetranychus urticae tetur29g01000 I 0.707
pax2a Tetraodon nigroviridis ENSTNIG00000008644 I 0.715
ENSTNIG00000005391 Tetraodon nigroviridis ENSTNIG00000005391 I 0.724
pax5 Tetraodon nigroviridis ENSTNIG00000005085 I 0.715
TCLT_0000192601 Thelazia callipaeda TCLT_0000192601 N 0.772
TRE_0000921601 Trichobilharzia regenti TRE_0000921601 I 0.800
ENSTBEG00000016999 Tupaia belangeri ENSTBEG00000016999 I 0.720
PAX5 Tupaia belangeri ENSTBEG00000007983 I 0.800
PAX5 Tursiops truncatus ENSTTRG00000006049 I 0.800
WUBG_13045 Wuchereria bancrofti WUBG_13045 I 0.779
pax5.L Xenopus laevis XB-GENE-865318 I 0.724
pax2.L Xenopus laevis XB-GENE-486805 I 0.740
AAC60302 Xenopus laevis AAC60302 I 0.926
pax2 Xenopus tropicalis XB-GENE-486801 D 0.740
XP_002935920 Xenopus tropicalis XP_002935920 I 0.740
ENSXMAG00000012680 Xiphophorus maculatus ENSXMAG00000012680 I 0.712
ENSXMAG00000003038 Xiphophorus maculatus ENSXMAG00000003038 I 0.728