Ogr06456 (Ophisaurus gracilis)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 Ogr06456 T312170_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PAX7
M00346_2.00
Homo sapiens
NGTYAYGSHN

NDSCRTRACN
PBM
Barrera et al.(2016)
PAX7_REF
0.910 0.910
PAX7
M00345_2.00
Homo sapiens
NSGTCACGSN

NSCGTGACSN
PBM
Barrera et al.(2016)
PAX7_P112L
0.902 0.902
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN

NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.705 0.705
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN

NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.705 0.705
PAX1
M03442_2.00
Homo sapiens
DBCANTSAWGCGTGACS

SGTCACGCWTSANTGVH
SELEX
Jolma et al.(2013)
PAX1_1
0.705 0.705
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN

NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.705 0.705
PAX9
M03444_2.00
Homo sapiens
NKCANTSAWGCGTGACS

SGTCACGCWTSANTGMN
SELEX
Jolma et al.(2013)
PAX9_1
0.705 0.705
PAX1
M05687_2.00
Homo sapiens
BCRNTSRWGCGTGACSN

NSGTCACGCWYSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX
0.705 0.705
PAX9
M05689_2.00
Homo sapiens
BHRNYSRDSCGTRACSN

NSGTYACGSHYSRNYDV
SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX
0.705 0.705
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN

NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.705 0.705
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC

GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.705 0.705
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC

GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.705 0.705
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN

NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.705 0.705
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC

GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.705 0.705
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM

KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.705 0.705
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG

CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.705 0.705
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC

GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.705 0.705
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM

KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.705 0.705
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN

NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.705 0.705
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC

GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.705 0.705
PAX1
M11207_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX1_B
0.705 0.705
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB

VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.705 0.705
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH

DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.705 0.705
PAX5
M11210_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.705 0.705
PAX5
M11211_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.705 0.705
PAX5
M11212_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.705 0.705
PAX1
M05688_2.00
Homo sapiens
BCRNTSAWGCGTGACSN

NSGTCACGCWTSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX
0.705 0.705
PAX9
M05690_2.00
Homo sapiens
BCRNTSAWSCGYGACNN

NNGTCRCGSWTSANYGV
SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX
0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr06456 Paired box 34 155

Links

Other Paired box family TFs
Other Ophisaurus gracilis TFs

210 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000002906 Ailuropoda melanoleuca ENSAMEG00000002906 I 0.705
ENSAMEG00000012642 Ailuropoda melanoleuca ENSAMEG00000012642 I 0.705
ENSAMEG00000010127 Ailuropoda melanoleuca ENSAMEG00000010127 I 0.705
Alligator_sinensis_CCG006492.1 Alligator sinensis Alligator_sinensis_CCG006492.1 I 0.910
Alligator_sinensis_CCG004503.1 Alligator sinensis Alligator_sinensis_CCG004503.1 I 0.705
Alligator_sinensis_CCG007145.2 Alligator sinensis Alligator_sinensis_CCG007145.2 I 0.943
Alligator_sinensis_CCG007145.1 Alligator sinensis Alligator_sinensis_CCG007145.1 I 0.959
ENSAPLG00000012856 Anas platyrhynchos ENSAPLG00000012856 I 0.705
ENSACAG00000001481 Anolis carolinensis ENSACAG00000001481 I 0.705
ENSACAG00000011033 Anolis carolinensis ENSACAG00000011033 I 0.705
ENSACAG00000010563 Anolis carolinensis ENSACAG00000010563 I 0.705
ACUA026425 Anopheles culicifacies ACUA026425 I 0.754
AFAF004706 Anopheles farauti AFAF004706 I 0.721
AFUN002668 Anopheles funestus AFUN002668 I 0.721
AMIN006553 Anopheles minimus AMIN006553 I 0.754
Afo_R004464 Aptenodytes forsteri Afo_R004464 I 0.705
Afo_R005136 Aptenodytes forsteri Afo_R005136 I 0.705
ENSAMXG00000009227 Astyanax mexicanus ENSAMXG00000009227 I 0.705
ENSAMXG00000012274 Astyanax mexicanus ENSAMXG00000012274 I 0.705
ENSAMXG00000008583 Astyanax mexicanus ENSAMXG00000008583 I 0.713
ACEP15304 Atta cephalotes ACEP15304 I 0.777
ACEP15310 Atta cephalotes ACEP15310 I 0.804
ENSP00000384817-D1 Bos grunniens ENSP00000384817-D1 I 0.705
ENSP00000350844-D1 Bos grunniens ENSP00000350844-D1 I 0.705
ENSBTAP00000008861-D1 Bos grunniens ENSBTAP00000008861-D1 I 0.705
PAX1 Bos taurus ENSBTAG00000006742 I 0.705
PAX9 Bos taurus ENSBTAG00000009186 I 0.705
PAX5 Bos taurus ENSBTAG00000012498 I 0.705
Brh_R001926 Buceros rhinoceros Brh_R001926 I 0.705
PAX1 Callithrix jacchus ENSCJAG00000005773 I 0.705
PAX5 Callithrix jacchus ENSCJAG00000010379 I 0.705
PAX9 Callithrix jacchus ENSCJAG00000016460 I 0.705
PAX3 Callithrix jacchus ENSCJAG00000012088 I 0.943
Aan_R002178 Calypte anna Aan_R002178 I 0.705
Aan_R005718 Calypte anna Aan_R005718 I 0.705
Cflo_06473--XP_394848.3_APIME Camponotus floridanus Cflo_06473--XP_394848.3_APIME I 0.762
PAX9 Canis familiaris ENSCAFG00000013690 I 0.705
PAX5 Canis familiaris ENSCAFG00000002357 I 0.705
PAX1 Canis familiaris ENSCAFG00000005170 I 0.705
PAX9 Cavia porcellus ENSCPOG00000010951 I 0.705
PAX1 Cavia porcellus ENSCPOG00000002886 I 0.705
PAX5 Cavia porcellus ENSCPOG00000009987 I 0.705
Cmyd_10010530 Chelonia mydas Cmyd_10010530 I 0.959
ENSCSAG00000011068 Chlorocebus sabaeus ENSCSAG00000011068 I 0.705
ENSCSAG00000015463 Chlorocebus sabaeus ENSCSAG00000015463 I 0.705
ENSCSAG00000010751 Chlorocebus sabaeus ENSCSAG00000010751 I 0.705
PAX5 Choloepus hoffmanni ENSCHOG00000003521 I 0.705
CGI_10005222 Crassostrea gigas CGI_10005222 I 0.705
CpipJ_CPIJ006494 Culex pipiens CpipJ_CPIJ006494 I 0.754
CPIJ006494 Culex quinquefasciatus CPIJ006494 I 0.754
pax1a Danio rerio ENSDARG00000008203 I 0.705
pax1b Danio rerio ENSDARG00000073814 I 0.705
pax2a Danio rerio ENSDARG00000028148 I 0.713
pax8 Danio rerio ENSDARG00000015879 I 0.705
DAPPUDRAFT_7942 Daphnia pulex DAPPUDRAFT_7942 I 0.705
PAX1 Dasypus novemcinctus ENSDNOG00000033546 I 0.705
PAX9 Dasypus novemcinctus ENSDNOG00000000352 I 0.705
Pax1 Dipodomys ordii ENSDORG00000016051 I 0.705
Pax7 Dipodomys ordii ENSDORG00000011854 I 0.910
Pax5 Dipodomys ordii ENSDORG00000015818 I 0.705
GL14130 Drosophila persimilis FBgn0151735 I 0.770
PAX5 Echinops telfairi ENSETEG00000002360 I 0.705
PAX9 Echinops telfairi ENSETEG00000002086 I 0.705
PAX5 Equus caballus ENSECAG00000000551 I 0.705
PAX9 Equus caballus ENSECAG00000023712 I 0.705
PAX1 Erinaceus europaeus ENSEEUG00000007846 I 0.705
PAX5 Erinaceus europaeus ENSEEUG00000012531 I 0.705
PAX9 Felis catus ENSFCAG00000001024 I 0.705
PAX5 Felis catus ENSFCAG00000001628 I 0.705
PAX1 Felis catus ENSFCAG00000004293 I 0.705
ENSFALG00000006155 Ficedula albicollis ENSFALG00000006155 I 0.705
ENSFALG00000012983 Ficedula albicollis ENSFALG00000012983 I 0.705
ENSGMOG00000003366 Gadus morhua ENSGMOG00000003366 I 0.902
ENSGMOG00000018913 Gadus morhua ENSGMOG00000018913 I 0.713
ENSGALG00000028576 Gallus gallus ENSGALG00000028576 I 0.705
Pax5B Gallus gallus ENSGALG00000016431 D 0.705
PAX9 Gallus gallus ENSGALG00000010114 I 0.705
Pax-2 Gallus gallus ENSGALG00000005689 I 0.705
pax1a Gasterosteus aculeatus ENSGACG00000006987 I 0.713
Gfo_R013093 Geospiza fortis Gfo_R013093 I 0.705
PAX9 Gorilla gorilla ENSGGOG00000001528 I 0.705
PAX1 Gorilla gorilla ENSGGOG00000016075 I 0.705
PAX5 Gorilla gorilla ENSGGOG00000003633 I 0.705
HelroG124549 Helobdella robusta HelroG124549 I 0.705
PAX9 Homo sapiens ENSG00000198807 D 0.705
PAX5 Homo sapiens ENSG00000196092 D 0.705
PAX1 Homo sapiens ENSG00000125813 D 0.705
PAX3 Homo sapiens ENSG00000135903 D 0.943
PAX2 Homo sapiens ENSG00000075891 D 0.705
PAX7 Homo sapiens ENSG00000009709 D 0.910
ENSSTOG00000003000 Ictidomys tridecemlineatus ENSSTOG00000003000 I 0.705
ENSSTOG00000024354 Ictidomys tridecemlineatus ENSSTOG00000024354 I 0.705
ENSSTOG00000015730 Ictidomys tridecemlineatus ENSSTOG00000015730 I 0.705
ISCW003096 Ixodes scapularis ISCW003096 I 0.721
ENSLACG00000009610 Latimeria chalumnae ENSLACG00000009610 I 0.705
ENSLACG00000015921 Latimeria chalumnae ENSLACG00000015921 I 0.705
ENSLACG00000013159 Latimeria chalumnae ENSLACG00000013159 I 0.705
ENSLOCG00000015261 Lepisosteus oculatus ENSLOCG00000015261 I 0.705
ENSLOCG00000016871 Lepisosteus oculatus ENSLOCG00000016871 I 0.713
LotgiG161614 Lottia gigantea LotgiG161614 I 0.705
PAX9 Loxodonta africana ENSLAFG00000017541 I 0.705
PAX5 Loxodonta africana ENSLAFG00000028851 I 0.705
ENSP00000350844 Macaca fascicularis ENSP00000350844 I 0.705
ENSP00000355245 Macaca fascicularis ENSP00000355245 I 0.705
ENSP00000381499 Macaca fascicularis ENSP00000381499 I 0.705
PAX1 Macaca mulatta ENSMMUG00000019409 I 0.705
PAX3 Macaca mulatta ENSMMUG00000020409 I 0.943
PAX9 Macaca mulatta ENSMMUG00000009648 I 0.705
ENSMEUG00000010140 Macropus eugenii ENSMEUG00000010140 I 0.705
ENSMEUG00000002095 Macropus eugenii ENSMEUG00000002095 I 0.705
PAX5 Microcebus murinus ENSMICG00000017679 I 0.705
PAX9 Microcebus murinus ENSMICG00000010808 I 0.705
PAX9 Monodelphis domestica ENSMODG00000012681 I 0.705
PAX5 Monodelphis domestica ENSMODG00000002720 I 0.705
PAX1 Monodelphis domestica ENSMODG00000006198 I 0.705
ENSMODG00000025571 Monodelphis domestica ENSMODG00000025571 I 0.910
ENSMPUG00000016259 Mustela putorius furo ENSMPUG00000016259 I 0.705
ENSMPUG00000001187 Mustela putorius furo ENSMPUG00000001187 I 0.705
ENSMPUG00000006012 Mustela putorius furo ENSMPUG00000006012 I 0.705
Pax9 Mus musculus ENSMUSG00000001497 I 0.705
Pax5 Mus musculus ENSMUSG00000014030 D 0.705
Pax1 Mus musculus ENSMUSG00000037034 I 0.705
Myotis_brandtii_PAX5_10017827 Myotis brandtii Myotis_brandtii_PAX5_10017827 I 0.705
PAX9 Myotis lucifugus ENSMLUG00000011407 I 0.705
PAX5 Myotis lucifugus ENSMLUG00000012652 I 0.705
PAX1 Myotis lucifugus ENSMLUG00000014710 I 0.705
ENSNLEG00000010049 Nomascus leucogenys ENSNLEG00000010049 I 0.705
ENSNLEG00000003664 Nomascus leucogenys ENSNLEG00000003664 I 0.705
ENSNLEG00000003346 Nomascus leucogenys ENSNLEG00000003346 I 0.705
PAX5 Ochotona princeps ENSOPRG00000000734 I 0.705
PAX1 Ochotona princeps ENSOPRG00000017249 I 0.705
OESDEN_18680 Oesophagostomum dentatum OESDEN_18680 I 0.773
Ogr18043 Ophisaurus gracilis Ogr18043 I 0.705
Ogr18451 Ophisaurus gracilis Ogr18451 I 0.705
Ogr19508 Ophisaurus gracilis Ogr19508 I 0.705
ENSONIG00000018496 Oreochromis niloticus ENSONIG00000018496 I 0.713
ENSONIG00000008137 Oreochromis niloticus ENSONIG00000008137 I 0.713
ENSONIG00000000205 Oreochromis niloticus ENSONIG00000000205 I 0.705
PAX5 Ornithorhynchus anatinus ENSOANG00000007579 I 0.705
PAX9 Ornithorhynchus anatinus ENSOANG00000014065 I 0.705
PAX1 Ornithorhynchus anatinus ENSOANG00000002008 I 0.705
PAX1 Oryctolagus cuniculus ENSOCUG00000003276 I 0.705
PAX5 Oryctolagus cuniculus ENSOCUG00000012281 I 0.705
pax1 Oryzias latipes ENSORLG00000017412 I 0.713
ENSORLG00000019389 Oryzias latipes ENSORLG00000019389 I 0.844
ENSOGAG00000004773 Otolemur garnettii ENSOGAG00000004773 I 0.705
ENSOGAG00000013131 Otolemur garnettii ENSOGAG00000013131 I 0.705
PAX1 Otolemur garnettii ENSOGAG00000033162 I 0.705
ENSOARG00000004951 Ovis aries ENSOARG00000004951 I 0.705
ENSOARG00000011518 Ovis aries ENSOARG00000011518 I 0.705
ENSOARG00000008050 Ovis aries ENSOARG00000008050 I 0.705
PAX5 Pan troglodytes ENSPTRG00000020936 I 0.705
PAX1 Pan troglodytes ENSPTRG00000013311 I 0.705
PAX9 Pan troglodytes ENSPTRG00000006281 I 0.705
ENSPANG00000008282 Papio anubis ENSPANG00000008282 I 0.705
ENSPANG00000025475 Papio anubis ENSPANG00000025475 I 0.705
ENSPANG00000000932 Papio anubis ENSPANG00000000932 I 0.705
ENSPSIG00000010961 Pelodiscus sinensis ENSPSIG00000010961 I 0.705
ENSPMAG00000010308 Petromyzon marinus ENSPMAG00000010308 I 0.705
ENSPMAG00000010414 Petromyzon marinus ENSPMAG00000010414 I 0.713
ENSPFOG00000003208 Poecilia formosa ENSPFOG00000003208 I 0.713
ENSPFOG00000013202 Poecilia formosa ENSPFOG00000013202 I 0.713
ENSPFOG00000019830 Poecilia formosa ENSPFOG00000019830 I 0.705
Pvit_17942 Pogona vitticeps Pvit_17942 I 0.705
Pvit_15554 Pogona vitticeps Pvit_15554 I 0.705
ENSPPYG00000019064 Pongo abelii ENSPPYG00000019064 I 0.705
ENSPPYG00000010758 Pongo abelii ENSPPYG00000010758 I 0.705
ENSPPYG00000005755 Pongo abelii ENSPPYG00000005755 I 0.705
PAX5 Procavia capensis ENSPCAG00000004660 I 0.705
PAX7 Procavia capensis ENSPCAG00000005303 I 0.910
PAX1 Procavia capensis ENSPCAG00000003556 I 0.705
PAX1 Pteropus vampyrus ENSPVAG00000002604 I 0.705
PAX5 Pteropus vampyrus ENSPVAG00000000054 I 0.705
Pax9 Rattus norvegicus ENSRNOG00000008826 I 0.705
Pax5 Rattus norvegicus ENSRNOG00000024729 I 0.705
Pax2 Rattus norvegicus ENSRNOG00000014253 I 0.713
RPRC008887 Rhodnius prolixus RPRC008887 I 0.760
Sakowv30025789m.g Saccoglossus kowalevskii Sakowv30025789m.g I 0.713
Sakowv30044183m.g Saccoglossus kowalevskii Sakowv30044183m.g I 0.705
ENSSHAG00000017556 Sarcophilus harrisii ENSSHAG00000017556 I 0.705
ENSSHAG00000005531 Sarcophilus harrisii ENSSHAG00000005531 I 0.705
SINV15897 Solenopsis invicta SINV15897 I 0.713
PAX9 Sorex araneus ENSSARG00000000337 I 0.705
SMAR015380 Strigamia maritima SMAR015380 I 0.803
SMAR008441 Strigamia maritima SMAR008441 I 0.800
SPU_006683 Strongylocentrotus purpuratus SPU_006683 I 0.721
ENSSSCG00000005345 Sus scrofa ENSSSCG00000005345 I 0.705
ENSSSCG00000001943 Sus scrofa ENSSSCG00000001943 I 0.705
PAX1 Sus scrofa ENSSSCG00000007112 I 0.705
PAX5 Taeniopygia guttata ENSTGUG00000007215 I 0.705
PAX9 Taeniopygia guttata ENSTGUG00000012015 I 0.705
ENSTGUG00000007526 Taeniopygia guttata ENSTGUG00000007526 I 0.705
pax2a Takifugu rubripes ENSTRUG00000008891 I 0.713
pax1a Takifugu rubripes ENSTRUG00000008079 I 0.713
ENSTRUG00000007849 Takifugu rubripes ENSTRUG00000007849 I 0.910
pax2b Takifugu rubripes ENSTRUG00000011987 I 0.713
ENSTSYG00000001117 Tarsius syrichta ENSTSYG00000001117 I 0.705
ENSTNIG00000005391 Tetraodon nigroviridis ENSTNIG00000005391 I 0.705
ENSTNIG00000005618 Tetraodon nigroviridis ENSTNIG00000005618 I 0.910
pax1a Tetraodon nigroviridis ENSTNIG00000016891 I 0.713
PAX9 Tupaia belangeri ENSTBEG00000002460 I 0.705
PAX1 Tursiops truncatus ENSTTRG00000002444 I 0.705
pax2.L Xenopus laevis XB-GENE-486805 I 0.705
pax9.L Xenopus laevis XB-GENE-864845 I 0.705
XP_002935920 Xenopus tropicalis XP_002935920 I 0.705
pax1 Xenopus tropicalis XB-GENE-487951 I 0.705
pax2 Xenopus tropicalis XB-GENE-486801 D 0.705
pax9 Xenopus tropicalis XB-GENE-482238 I 0.705
ENSXMAG00000003038 Xiphophorus maculatus ENSXMAG00000003038 I 0.705
ENSXMAG00000019114 Xiphophorus maculatus ENSXMAG00000019114 I 0.713