pax2.S (Xenopus laevis)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 XB-GENE-6256440 T312277_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR

YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.957 0.957
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN

NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.957 0.957
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN

NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.913 0.913
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM

KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.913 0.913
PAX8
M11205_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.913 0.913
PAX8
M11206_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.913 0.913
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN

NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.913 0.913
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN

NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.870 0.870
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN

NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.870 0.870
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN

NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.870 0.870
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC

GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.870 0.870
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC

GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.870 0.870
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN

NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.870 0.870
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC

GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.870 0.870
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM

KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.870 0.870
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG

CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.870 0.870
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC

GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.870 0.870
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM

KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.870 0.870
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN

NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.870 0.870
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC

GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.870 0.870
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB

VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.870 0.870
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH

DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.870 0.870
PAX5
M11210_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.870 0.870
PAX5
M11211_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.870 0.870
PAX5
M11212_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.870 0.870
sv
M01302_2.00
Drosophila melanogaster
NNNSCRBRDM

KHYVYGSNNN
PBM
Lambert et al.(2019)
pTH9773
0.739 0.739
Poxm
M03944_2.00
Drosophila melanogaster
CAVTCAWGCGTGACR

YGTCACGCWTGABTG
SELEX
Nitta et al.(2015)
Poxm_1
0.739 0.739
Poxm
M03945_2.00
Drosophila melanogaster
NYSAWGCRTRACS

SGTYAYGCWTSRN
SELEX
Nitta et al.(2015)
Poxm_2
0.739 0.739
sv
M03949_2.00
Drosophila melanogaster
NBCRNYSAWGCGTGACS

SGTCACGCWTSRNYGVN
SELEX
Nitta et al.(2015)
sv_1
0.739 0.739
Poxm
M06436_2.00
Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA

TCAYGSNYNDNBKNNNNNN
B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129
0.739 0.739
sv
M06438_2.00
Drosophila melanogaster
RNYSRDSCGTRACNN

NNGTYACGSHYSRNY
B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561
0.739 0.739
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAB84188 Paired box 1 23

Links

Other Paired box family TFs
Other Xenopus laevis TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSONIG00000016065 Oreochromis niloticus ENSONIG00000016065 I 0.957
ENSPFOG00000003702 Poecilia formosa ENSPFOG00000003702 I 0.957
pax2b Danio rerio ENSDARG00000032578 D 0.957
ENSGMOG00000000463 Gadus morhua ENSGMOG00000000463 I 0.957
pax2.L Xenopus laevis XB-GENE-486805 I 0.957
pax2b Takifugu rubripes ENSTRUG00000011987 I 0.913
Pax8 Dipodomys ordii ENSDORG00000002606 I 0.913
pax2a Danio rerio ENSDARG00000028148 I 0.913
ENSLOCG00000012825 Lepisosteus oculatus ENSLOCG00000012825 I 0.870
Pax5 Mus musculus ENSMUSG00000014030 D 0.870
pax8 Oryzias latipes ENSORLG00000007225 I 0.870
PAX5 Anolis carolinensis ENSACAG00000011646 I 0.870
ENSLACG00000013159 Latimeria chalumnae ENSLACG00000013159 I 0.870
pax8 Danio rerio ENSDARG00000015879 I 0.870
pax5.L Xenopus laevis XB-GENE-865318 I 0.870
ENSACAG00000011033 Anolis carolinensis ENSACAG00000011033 I 0.826
pax5 Tetraodon nigroviridis ENSTNIG00000005085 I 0.826
pax8 Tetraodon nigroviridis ENSTNIG00000009029 I 0.826
pax8 Gasterosteus aculeatus ENSGACG00000016747 I 0.826
GJ13730 Drosophila virilis FBgn0200951 I 0.783
GK13586 Drosophila willistoni FBgn0215594 I 0.783
DICVIV_04707 Dictyocaulus viviparus DICVIV_04707 I 0.783
HCOI01205400 Haemonchus contortus HCOI01205400 I 0.783
TELCIR_10899 Teladorsagia circumcincta TELCIR_10899 I 0.783
GL18401 Drosophila persimilis FBgn0156002 I 0.783
LLOJ002076 Lutzomyia longipalpis LLOJ002076 I 0.783
MESCA003563 Megaselia scalaris MESCA003563 I 0.783
spa-sv Drosophila pseudoobscura FBgn0249275 I 0.783
GI14046 Drosophila mojavensis FBgn0136800 I 0.783
Pax5 Rattus norvegicus ENSRNOG00000024729 I 0.783
GH23966 Drosophila grimshawi FBgn0131423 I 0.783
ANCCAN_01420 Ancylostoma caninum ANCCAN_01420 N 0.739
PAX8 Microcebus murinus ENSMICG00000003265 I 0.739
MDOA001030 Musca domestica MDOA001030 I 0.739
PAX8 Ochotona princeps ENSOPRG00000012910 I 0.739
ASTEI06196 Anopheles stephensi ASTEI06196 I 0.739
ENSLOCG00000015261 Lepisosteus oculatus ENSLOCG00000015261 I 0.739
L889_g28670 Steinernema feltiae L889_g28670 I 0.739
AGAP000057 Anopheles gambiae AGAP000057 I 0.739
SPER_0000498301 Spirometra erinaceieuropaei SPER_0000498301 I 0.739
L898_g18055 Steinernema monticolum L898_g18055 I 0.739
ASIS021176 Anopheles sinensis ASIS021176 I 0.739
L596_g7168 Steinernema carpocapsae L596_g7168 I 0.739
AMEM003247 Anopheles merus AMEM003247 I 0.739
PAX8 Pan troglodytes ENSPTRG00000012380 I 0.739
ACHR009800 Anopheles christyi ACHR009800 I 0.739
tetur29g01000 Tetranychus urticae tetur29g01000 I 0.739
ENSSARG00000014324 Sorex araneus ENSSARG00000014324 I 0.739
GF20618 Drosophila ananassae FBgn0097624 I 0.739
ACUA027429 Anopheles culicifacies ACUA027429 I 0.739
ADIR000964 Anopheles dirus ADIR000964 I 0.739
GM13025 Drosophila sechellia FBgn0167956 I 0.739
AMEC016969 Anopheles melas AMEC016969 I 0.739
AFUN011579 Anopheles funestus AFUN011579 I 0.739
AFAF010901 Anopheles farauti AFAF010901 I 0.739
AMIN002123 Anopheles minimus AMIN002123 I 0.739