CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ACHR009211
(
Anopheles christyi
)
Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00292 (PAX)
IPR001523
ACHR009211
T312365_2.00
Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Poxn
M03946_2.00
Drosophila melanogaster
DGCGTGACSGTCACGSY
RSCGTGACSGTCACGCH
SELEX
Nitta et al.(2015)
Poxn_1
0.880
0.880
Poxn
M03947_2.00
Drosophila melanogaster
RSCGKGACSGTTMCGSW
WSCGKAACSGTCMCGSY
SELEX
Nitta et al.(2015)
Poxn_2
0.880
0.880
Poxn
M03948_2.00
Drosophila melanogaster
NCGTTCCGGAACGD
HCGTTCCGGAACGN
SELEX
Nitta et al.(2015)
Poxn_3
0.880
0.880
Poxn
M06437_2.00
Drosophila melanogaster
RSCGTGACG
CGTCACGSY
B1H
Zhu et al.(2011)
Poxn_SOLEXA_5_FBgn0003130
0.880
0.880
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR
YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.759
0.759
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN
NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.759
0.759
sv
M01302_2.00
Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN
PBM
Lambert et al.(2019)
pTH9773
0.759
0.759
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.759
0.759
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.759
0.759
sv
M03949_2.00
Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN
SELEX
Nitta et al.(2015)
sv_1
0.759
0.759
sv
M06438_2.00
Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY
B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561
0.759
0.759
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.759
0.759
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.759
0.759
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.759
0.759
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.759
0.759
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.759
0.759
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.759
0.759
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG
CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.759
0.759
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.759
0.759
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.759
0.759
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.759
0.759
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.759
0.759
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.759
0.759
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.759
0.759
PAX5
M11210_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.759
0.759
PAX5
M11211_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.759
0.759
PAX5
M11212_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.759
0.759
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.723
0.723
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.723
0.723
PAX8
M11205_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.723
0.723
PAX8
M11206_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.723
0.723
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.723
0.723
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ACHR009211-PA
Paired box
9
91
GQAGVNQLGGVFVNGRPLPDIVRRRIVELALMGVRPCDISRQLLVSHGCVSKILTRFYETGSIRPGSIGGSKTKVSLIPIEKA
Links
Other
Paired box
family TFs
Other
Anopheles christyi
TFs
191 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CPIJ009206
Culex quinquefasciatus
CPIJ009206
I
0.939
CpipJ_CPIJ009206
Culex pipiens
CpipJ_CPIJ009206
I
0.939
AMEM011238
Anopheles merus
AMEM011238
I
0.916
AMEC005358
Anopheles melas
AMEC005358
I
0.916
ACOM039288
Anopheles coluzzii
ACOM039288
I
0.916
AFAF002012
Anopheles farauti
AFAF002012
I
0.916
AGAP008818
Anopheles gambiae
AGAP008818
I
0.916
AATE014886
Anopheles atroparvus
AATE014886
I
0.916
ACUA016445
Anopheles culicifacies
ACUA016445
I
0.904
ASIS007673
Anopheles sinensis
ASIS007673
I
0.904
AMAM005900
Anopheles maculatus
AMAM005900
I
0.904
AEPI004837
Anopheles epiroticus
AEPI004837
I
0.892
LCUP005878
Lucilia cuprina
LCUP005878
I
0.892
LLOJ000106
Lutzomyia longipalpis
LLOJ000106
I
0.892
ADIR011362
Anopheles dirus
ADIR011362
I
0.892
MDOA010966
Musca domestica
MDOA010966
I
0.892
AARA010781
Anopheles arabiensis
AARA010781
I
0.892
AALB001179
Anopheles albimanus
AALB001179
I
0.892
YQE_05418
Dendroctonus ponderosae
YQE_05418
N
0.880
L798_15745
Zootermopsis nevadensis
L798_15745
I
0.880
AQUA004184
Anopheles quadriannulatus
AQUA004184
I
0.880
NV12756
Nasonia vitripennis
NV12756
I
0.880
GH20564
Drosophila grimshawi
FBgn0128027
I
0.867
GF13369
Drosophila ananassae
FBgn0090401
I
0.867
RPRC011448
Rhodnius prolixus
RPRC011448
N
0.867
ENSTSYG00000008085
Tarsius syrichta
ENSTSYG00000008085
I
0.855
PAX5
Tursiops truncatus
ENSTTRG00000006049
I
0.855
PAX5
Tupaia belangeri
ENSTBEG00000007983
I
0.855
AFUN008226
Anopheles funestus
AFUN008226
I
0.852
CGI_10012686
Crassostrea gigas
CGI_10012686
I
0.843
ACYPI52155
Acyrthosiphon pisum
ACYPI52155
I
0.843
ISCW000175
Ixodes scapularis
ISCW000175
I
0.843
LotgiG99097
Lottia gigantea
LotgiG99097
I
0.843
ACEP20056
Atta cephalotes
ACEP20056
I
0.831
Cflo_00736--XP_001122746.1_APIME
Camponotus floridanus
Cflo_00736--XP_001122746.1_APIME
I
0.819
Sakowv30025789m.g
Saccoglossus kowalevskii
Sakowv30025789m.g
I
0.819
Ocbimv22007901m.g
Octopus bimaculoides
Ocbimv22007901m.g
I
0.819
SPU_027334
Strongylocentrotus purpuratus
SPU_027334
I
0.795
OESDEN_18680
Oesophagostomum dentatum
OESDEN_18680
I
0.795
ENSXMAG00000012680
Xiphophorus maculatus
ENSXMAG00000012680
I
0.771
pax5
Takifugu rubripes
ENSTRUG00000003227
I
0.771
GM13025
Drosophila sechellia
FBgn0167956
I
0.771
pax5
Tetraodon nigroviridis
ENSTNIG00000005085
I
0.771
pax6a
Danio rerio
ENSDARG00000103379
I
0.771
pax5
Danio rerio
ENSDARG00000037383
I
0.771
pax2b
Takifugu rubripes
ENSTRUG00000011987
I
0.771
ENSPFOG00000011719
Poecilia formosa
ENSPFOG00000011719
I
0.771
GL18401
Drosophila persimilis
FBgn0156002
I
0.759
GI14046
Drosophila mojavensis
FBgn0136800
I
0.759
ENSTNIG00000005391
Tetraodon nigroviridis
ENSTNIG00000005391
I
0.759
PAX5
Taeniopygia guttata
ENSTGUG00000007215
I
0.759
pax2a
Takifugu rubripes
ENSTRUG00000008891
I
0.759
ENSTSYG00000001117
Tarsius syrichta
ENSTSYG00000001117
I
0.759
GF20618
Drosophila ananassae
FBgn0097624
I
0.759
GH23966
Drosophila grimshawi
FBgn0131423
I
0.759
ENSP00000350844
Macaca fascicularis
ENSP00000350844
I
0.759
Pvit_15554
Pogona vitticeps
Pvit_15554
I
0.759
Ogr18043
Ophisaurus gracilis
Ogr18043
I
0.759
Myotis_brandtii_PAX5_10017827
Myotis brandtii
Myotis_brandtii_PAX5_10017827
I
0.759
Gfo_R013093
Geospiza fortis
Gfo_R013093
I
0.759
pax2
Xenopus tropicalis
XB-GENE-486801
D
0.759
XP_002935920
Xenopus tropicalis
XP_002935920
I
0.759
RSKR_0000585500
Rhabditophanes kr3021
RSKR_0000585500
I
0.759
PTRK_0001603600
Parastrongyloides trichosuri
PTRK_0001603600
I
0.759
nRc.2.0.1.g01878
Romanomermis culicivorax
nRc.2.0.1.g01878
I
0.759
ENSSTOG00000024354
Ictidomys tridecemlineatus
ENSSTOG00000024354
I
0.759
ENSP00000350844-D1
Bos grunniens
ENSP00000350844-D1
I
0.759
MESCA003563
Megaselia scalaris
MESCA003563
I
0.759
LotgiG135549
Lottia gigantea
LotgiG135549
I
0.759
spa-sv
Drosophila pseudoobscura
FBgn0249275
I
0.759
tetur29g01000
Tetranychus urticae
tetur29g01000
I
0.759
YQE_12361
Dendroctonus ponderosae
YQE_12361
I
0.759
Brh_R001926
Buceros rhinoceros
Brh_R001926
I
0.759
Afo_R005136
Aptenodytes forsteri
Afo_R005136
I
0.759
Aan_R002178
Calypte anna
Aan_R002178
I
0.759
GK13586
Drosophila willistoni
FBgn0215594
I
0.759
GJ13730
Drosophila virilis
FBgn0200951
I
0.759
PAX5
Choloepus hoffmanni
ENSCHOG00000003521
I
0.759
EFV60539
Trichinella spiralis
EFV60539
I
0.759
PAX5
Gorilla gorilla
ENSGGOG00000003633
I
0.759
Pax5B
Gallus gallus
ENSGALG00000016431
D
0.759
Pax-2
Gallus gallus
ENSGALG00000005689
I
0.759
PAX5
Canis familiaris
ENSCAFG00000002357
I
0.759
PAX5
Bos taurus
ENSBTAG00000012498
I
0.759
pax2a
Danio rerio
ENSDARG00000028148
I
0.759
PAX5
Loxodonta africana
ENSLAFG00000028851
I
0.759
ENSLACG00000013159
Latimeria chalumnae
ENSLACG00000013159
I
0.759
Pax2
Rattus norvegicus
ENSRNOG00000014253
I
0.759
PAX5
Callithrix jacchus
ENSCJAG00000010379
I
0.759
PAX5
Cavia porcellus
ENSCPOG00000009987
I
0.759
PAX5
Erinaceus europaeus
ENSEEUG00000012531
I
0.759
PAX5
Echinops telfairi
ENSETEG00000002360
I
0.759
PAX5
Equus caballus
ENSECAG00000000551
I
0.759
Pax5
Dipodomys ordii
ENSDORG00000015818
I
0.759
pax2b
Danio rerio
ENSDARG00000032578
D
0.759
ENSFALG00000012983
Ficedula albicollis
ENSFALG00000012983
I
0.759
PAX5
Felis catus
ENSFCAG00000001628
I
0.759
pax2.L
Xenopus laevis
XB-GENE-486805
I
0.759
ENSCSAG00000010751
Chlorocebus sabaeus
ENSCSAG00000010751
I
0.759
PAX5
Homo sapiens
ENSG00000196092
D
0.759
ENSSSCG00000005345
Sus scrofa
ENSSSCG00000005345
I
0.759
PAX5
Myotis lucifugus
ENSMLUG00000012652
I
0.759
PAX5
Microcebus murinus
ENSMICG00000017679
I
0.759
ENSPANG00000025475
Papio anubis
ENSPANG00000025475
I
0.759
PAX5
Procavia capensis
ENSPCAG00000004660
I
0.759
ENSAMEG00000010127
Ailuropoda melanoleuca
ENSAMEG00000010127
I
0.759
PAX5
Ochotona princeps
ENSOPRG00000000734
I
0.759
ENSONIG00000018496
Oreochromis niloticus
ENSONIG00000018496
I
0.759
ENSPFOG00000003702
Poecilia formosa
ENSPFOG00000003702
I
0.759
ENSPFOG00000013202
Poecilia formosa
ENSPFOG00000013202
I
0.759
PAX5
Pteropus vampyrus
ENSPVAG00000000054
I
0.759
Pax5
Rattus norvegicus
ENSRNOG00000024729
I
0.759
PAX5
Pan troglodytes
ENSPTRG00000020936
I
0.759
ENSACAG00000011033
Anolis carolinensis
ENSACAG00000011033
I
0.759
ENSPPYG00000019064
Pongo abelii
ENSPPYG00000019064
I
0.759
PAX2
Homo sapiens
ENSG00000075891
D
0.759
ENSONIG00000016065
Oreochromis niloticus
ENSONIG00000016065
I
0.759
Pax5
Mus musculus
ENSMUSG00000014030
D
0.759
ENSAMXG00000005158
Astyanax mexicanus
ENSAMXG00000005158
I
0.759
ENSMPUG00000006012
Mustela putorius furo
ENSMPUG00000006012
I
0.759
PAX5
Monodelphis domestica
ENSMODG00000002720
I
0.759
ENSOGAG00000004773
Otolemur garnettii
ENSOGAG00000004773
I
0.759
ENSNLEG00000003664
Nomascus leucogenys
ENSNLEG00000003664
I
0.759
PAX5
Oryctolagus cuniculus
ENSOCUG00000012281
I
0.759
PAX5
Ornithorhynchus anatinus
ENSOANG00000007579
I
0.759
ENSOARG00000011518
Ovis aries
ENSOARG00000011518
I
0.759
Bm1956
Brugia malayi
Bm1956
I
0.747
AMEM003247
Anopheles merus
AMEM003247
I
0.747
DAPPUDRAFT_311028
Daphnia pulex
DAPPUDRAFT_311028
I
0.747
AMIN002123
Anopheles minimus
AMIN002123
I
0.747
AMEC016969
Anopheles melas
AMEC016969
I
0.747
EVEC_0001357701
Enterobius vermicularis
EVEC_0001357701
I
0.747
PEQ_0001166701
Parascaris equorum
PEQ_0001166701
I
0.747
ENSLOCG00000012825
Lepisosteus oculatus
ENSLOCG00000012825
I
0.747
SMUV_0000412301
Syphacia muris
SMUV_0000412301
I
0.747
SPAL_0000372000
Strongyloides papillosus
SPAL_0000372000
I
0.747
SVE_0227200
Strongyloides venezuelensis
SVE_0227200
I
0.747
SSTP_0000522800
Strongyloides stercoralis
SSTP_0000522800
I
0.747
nLs.2.1.2.g05197
Litomosoides sigmodontis
nLs.2.1.2.g05197
I
0.747
nDi.2.2.2.g01404
Dirofilaria immitis
nDi.2.2.2.g01404
I
0.747
LLOJ002076
Lutzomyia longipalpis
LLOJ002076
I
0.747
ACEP12359
Atta cephalotes
ACEP12359
I
0.747
ACAC_0000893101
Angiostrongylus cantonensis
ACAC_0000893101
I
0.747
ALUE_0001419501
Ascaris lumbricoides
ALUE_0001419501
I
0.747
EEL_0001009001
Elaeophora elaphi
EEL_0001009001
I
0.747
ASU_03705
Ascaris suum
ASU_03705
I
0.747
AGAP000057
Anopheles gambiae
AGAP000057
I
0.747
pax5.L
Xenopus laevis
XB-GENE-865318
I
0.747
AFUN011579
Anopheles funestus
AFUN011579
I
0.747
pax2b
Gasterosteus aculeatus
ENSGACG00000002432
I
0.747
SINV11533
Solenopsis invicta
SINV11533
I
0.747
pax5
Gasterosteus aculeatus
ENSGACG00000016112
I
0.747
SPU_014539
Strongylocentrotus purpuratus
SPU_014539
I
0.747
ENSGMOG00000000463
Gadus morhua
ENSGMOG00000000463
I
0.747
LOAG_00159
Loa loa
LOAG_00159
I
0.747
pax2a
Gasterosteus aculeatus
ENSGACG00000008391
I
0.747
PAX5
Anolis carolinensis
ENSACAG00000011646
I
0.747
HelroG124549
Helobdella robusta
HelroG124549
I
0.747
ACUA027429
Anopheles culicifacies
ACUA027429
I
0.747
pax2b
Oryzias latipes
ENSORLG00000009321
I
0.747
ACHR009800
Anopheles christyi
ACHR009800
I
0.747
DAPPUDRAFT_38922
Daphnia pulex
DAPPUDRAFT_38922
I
0.741
L889_g28670
Steinernema feltiae
L889_g28670
I
0.735
L892_g26455
Steinernema scapterisci
L892_g26455
I
0.735
L596_g7168
Steinernema carpocapsae
L596_g7168
I
0.735
L898_g18055
Steinernema monticolum
L898_g18055
I
0.735
NEMVEDRAFT_v1g243681
Nematostella vectensis
NEMVEDRAFT_v1g243681
I
0.735
TELCIR_10899
Teladorsagia circumcincta
TELCIR_10899
I
0.735
L893_g8856
Steinernema glaseri
L893_g8856
I
0.735
HPLM_0000491501
Haemonchus placei
HPLM_0000491501
I
0.735
HCOI01205400
Haemonchus contortus
HCOI01205400
I
0.735
DICVIV_04707
Dictyocaulus viviparus
DICVIV_04707
I
0.735
ADIR000964
Anopheles dirus
ADIR000964
I
0.735
ENSLACG00000003762
Latimeria chalumnae
ENSLACG00000003762
I
0.735
LCUP013028
Lucilia cuprina
LCUP013028
I
0.727
SMRZ_0001886701
Schistosoma margrebowiei
SMRZ_0001886701
I
0.723
PAX8
Ochotona princeps
ENSOPRG00000012910
I
0.723
pax8.L
Xenopus laevis
XB-GENE-865008
I
0.723
PAX8
Pan troglodytes
ENSPTRG00000012380
I
0.723
SCUD_0002110701
Schistosoma curassoni
SCUD_0002110701
I
0.723
SROB_0000566701
Schistosoma rodhaini
SROB_0000566701
I
0.723
PAX8
Microcebus murinus
ENSMICG00000003265
I
0.723
MhA1_Contig108.frz3.gene37
Meloidogyne hapla
MhA1_Contig108.frz3.gene37
I
0.723
Smp_142940
Schistosoma mansoni
Smp_142940
I
0.723
SMAR014608
Strigamia maritima
SMAR014608
I
0.723
PAX8
Felis catus
ENSFCAG00000009580
I
0.723
Alligator_sinensis_CCG013279.1
Alligator sinensis
Alligator_sinensis_CCG013279.1
I
0.723
ANCCAN_01421
Ancylostoma caninum
ANCCAN_01421
I
0.720
PAX6
Homo sapiens
ENSG00000007372
D
0.714
csin100153
Clonorchis sinensis
csin100153
I
0.711
ACAC_0001290301
Angiostrongylus cantonensis
ACAC_0001290301
I
0.709