CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AFAF010901
(
Anopheles farauti
)
Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00292 (PAX)
IPR001523
AFAF010901
T312395_2.00
Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
sv
M01302_2.00
Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN
PBM
Lambert et al.(2019)
pTH9773
0.907
0.907
sv
M03949_2.00
Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN
SELEX
Nitta et al.(2015)
sv_1
0.907
0.907
sv
M06438_2.00
Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY
B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561
0.907
0.907
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR
YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.852
0.852
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.852
0.852
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN
NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.824
0.824
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.824
0.824
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.824
0.824
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.824
0.824
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.824
0.824
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.824
0.824
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.824
0.824
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.824
0.824
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG
CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.824
0.824
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.824
0.824
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.824
0.824
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.824
0.824
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.824
0.824
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.824
0.824
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.824
0.824
PAX5
M11210_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.824
0.824
PAX5
M11211_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.824
0.824
PAX5
M11212_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.824
0.824
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.796
0.796
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.796
0.796
PAX8
M11205_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.796
0.796
PAX8
M11206_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.796
0.796
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.796
0.796
egl-38
M02426_2.00
Caenorhabditis elegans
ACCGTGAYCAC
GTGRTCACGGT
PBM
Weirauch et al.(2014)
pTH8981
0.741
0.741
pax-2
M00706_2.00
Caenorhabditis elegans
RMSCRTRACS
SGTYAYGSKY
PBM
Narasimhan et al.(2015)
pTH10794
0.741
0.741
PAX1
M03442_2.00
Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH
SELEX
Jolma et al.(2013)
PAX1_1
0.713
0.713
PAX9
M03444_2.00
Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN
SELEX
Jolma et al.(2013)
PAX9_1
0.713
0.713
PAX1
M05687_2.00
Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX
0.713
0.713
PAX9
M05689_2.00
Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV
SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX
0.713
0.713
PAX1
M11207_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX1_B
0.713
0.713
PAX1
M05688_2.00
Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX
0.713
0.713
PAX9
M05690_2.00
Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV
SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX
0.713
0.713
pax9
M11204_2.00
Danio rerio
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX9_B
0.704
0.704
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AFAF010901-PA
Paired box
1
108
LPDLVRQRIVELAHNGIRPCDISRQLRVSHGCVSKILSRYYETGSFKAGVIGGSKPKVATPPVVDAIAAYKLQNPTMFAWEIRDKLLADGICVHDNVPSVSSINRIVR
Links
Other
Paired box
family TFs
Other
Anopheles farauti
TFs
179 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ADAC004542
Anopheles darlingi
ADAC004542
I
1.000
AARA001120
Anopheles arabiensis
AARA001120
I
1.000
AALB006342
Anopheles albimanus
AALB006342
I
1.000
AMEM003247
Anopheles merus
AMEM003247
I
0.991
AGAP000057
Anopheles gambiae
AGAP000057
I
0.991
AMEC016969
Anopheles melas
AMEC016969
I
0.991
ASIS021176
Anopheles sinensis
ASIS021176
I
0.991
ACHR009800
Anopheles christyi
ACHR009800
I
0.991
ACUA027429
Anopheles culicifacies
ACUA027429
I
0.991
AMIN002123
Anopheles minimus
AMIN002123
I
0.991
AFUN011579
Anopheles funestus
AFUN011579
I
0.991
AEPI005808
Anopheles epiroticus
AEPI005808
I
0.935
AMAM018366
Anopheles maculatus
AMAM018366
I
0.935
GK13586
Drosophila willistoni
FBgn0215594
I
0.917
spa-sv
Drosophila pseudoobscura
FBgn0249275
I
0.917
MESCA003563
Megaselia scalaris
MESCA003563
I
0.917
GJ13730
Drosophila virilis
FBgn0200951
I
0.917
GL18401
Drosophila persimilis
FBgn0156002
I
0.917
GH23966
Drosophila grimshawi
FBgn0131423
I
0.917
GI14046
Drosophila mojavensis
FBgn0136800
I
0.917
PHUM596300
Pediculus humanus
PHUM596300
I
0.912
AATE007772
Anopheles atroparvus
AATE007772
I
0.906
ASTEI06196
Anopheles stephensi
ASTEI06196
I
0.899
Hsal_05017--XP_001122481.1_APIME
Harpegnathos saltator
Hsal_05017--XP_001122481.1_APIME
I
0.894
ADIR000964
Anopheles dirus
ADIR000964
I
0.871
AAEL002348
Aedes aegypti
AAEL002348
I
0.864
CPIJ006382
Culex quinquefasciatus
CPIJ006382
I
0.864
CpipJ_CPIJ006382
Culex pipiens
CpipJ_CPIJ006382
I
0.864
AQUA008303
Anopheles quadriannulatus
AQUA008303
I
0.863
D917_02818
Trichinella nativa
D917_02818
I
0.855
pax2.L
Xenopus laevis
XB-GENE-486805
I
0.843
ENSLACG00000013159
Latimeria chalumnae
ENSLACG00000013159
I
0.833
CLEC006620
Cimex lectularius
CLEC006620
I
0.819
HHAL006987-PA
Halyomorpha halys
HHAL006987-PA
I
0.819
TELCIR_18859
Teladorsagia circumcincta
TELCIR_18859
I
0.814
BTMF_0001750801
Brugia timori
BTMF_0001750801
I
0.810
SSTP_0000522800
Strongyloides stercoralis
SSTP_0000522800
I
0.806
SPAL_0000372000
Strongyloides papillosus
SPAL_0000372000
I
0.806
SVE_0227200
Strongyloides venezuelensis
SVE_0227200
I
0.806
pax8
Tetraodon nigroviridis
ENSTNIG00000009029
I
0.806
Pax8
Dipodomys ordii
ENSDORG00000002606
I
0.805
PTRK_0001603600
Parastrongyloides trichosuri
PTRK_0001603600
I
0.796
TC003570
Tribolium castaneum
TC003570
I
0.792
LLOJ002076
Lutzomyia longipalpis
LLOJ002076
I
0.792
YQE_12361
Dendroctonus ponderosae
YQE_12361
I
0.787
LDEC012767
Leptinotarsa decemlineata
LDEC012767
I
0.787
GF20618
Drosophila ananassae
FBgn0097624
I
0.784
GG16406
Drosophila erecta
FBgn0108638
I
0.784
RPRC001909
Rhodnius prolixus
RPRC001909
I
0.784
sv
Drosophila melanogaster
FBgn0005561
D
0.784
GD24421
Drosophila simulans
FBgn0195757
I
0.784
GE14566
Drosophila yakuba
FBgn0232164
I
0.784
pax8
Xenopus tropicalis
XB-GENE-483693
I
0.781
KGM_12316
Danaus plexippus
KGM_12316
I
0.779
ACEP12359
Atta cephalotes
ACEP12359
I
0.779
LCUP011945
Lucilia cuprina
LCUP011945
I
0.779
ACYPI000633
Acyrthosiphon pisum
ACYPI000633
I
0.776
ENSOANG00000029256
Ornithorhynchus anatinus
ENSOANG00000029256
I
0.775
ENSPSIG00000012152
Pelodiscus sinensis
ENSPSIG00000012152
I
0.771
Pax8
Rattus norvegicus
ENSRNOG00000026203
D
0.771
BGIBMGA013358
Bombyx mori
BGIBMGA013358
I
0.766
SINV11533
Solenopsis invicta
SINV11533
I
0.766
PAX8
Equus caballus
ENSECAG00000009244
I
0.761
GM13025
Drosophila sechellia
FBgn0167956
I
0.760
MCINX012239
Melitaea cinxia
MCINX012239
I
0.760
Cflo_02260--XP_001122481.1_APIME
Camponotus floridanus
Cflo_02260--XP_001122481.1_APIME
I
0.760
tetur29g01000
Tetranychus urticae
tetur29g01000
I
0.760
TRE_0001207401
Trichobilharzia regenti
TRE_0001207401
I
0.754
SPER_0000498301
Spirometra erinaceieuropaei
SPER_0000498301
I
0.753
DAPPUDRAFT_311028
Daphnia pulex
DAPPUDRAFT_311028
I
0.752
TMUE_s0017010200
Trichuris muris
TMUE_s0017010200
I
0.752
GB53162
Apis mellifera
GB53162
I
0.752
D918_03581
Trichuris suis
D918_03581
I
0.752
CJA34444
Caenorhabditis japonica
CJA34444
I
0.750
PAX5
Homo sapiens
ENSG00000196092
D
0.750
SSLN_0001596201
Schistocephalus solidus
SSLN_0001596201
I
0.743
pax2.S
Xenopus laevis
XB-GENE-6256440
I
0.739
ENSACAG00000011033
Anolis carolinensis
ENSACAG00000011033
I
0.738
pax2b
Danio rerio
ENSDARG00000032578
D
0.736
ENSLOCG00000005490
Lepisosteus oculatus
ENSLOCG00000005490
I
0.736
ENSGMOG00000000463
Gadus morhua
ENSGMOG00000000463
I
0.736
Pax-2
Gallus gallus
ENSGALG00000005689
I
0.736
NV16807
Nasonia vitripennis
NV16807
I
0.736
pax2
Xenopus tropicalis
XB-GENE-486801
D
0.736
PAX2
Homo sapiens
ENSG00000075891
D
0.736
EFV60539
Trichinella spiralis
EFV60539
I
0.736
ANCDUO_11516
Ancylostoma duodenale
ANCDUO_11516
I
0.734
OFLC_0001261901
Onchocerca flexuosa
OFLC_0001261901
I
0.730
pax2b
Oryzias latipes
ENSORLG00000009321
I
0.728
ENSPFOG00000013202
Poecilia formosa
ENSPFOG00000013202
I
0.728
CGI_10024166
Crassostrea gigas
CGI_10024166
I
0.728
ENSONIG00000016065
Oreochromis niloticus
ENSONIG00000016065
I
0.728
pax2a
Gasterosteus aculeatus
ENSGACG00000008391
I
0.728
pax2b
Gasterosteus aculeatus
ENSGACG00000002432
I
0.728
ENSGMOG00000012561
Gadus morhua
ENSGMOG00000012561
I
0.728
ENSONIG00000018496
Oreochromis niloticus
ENSONIG00000018496
I
0.728
ENSPFOG00000003702
Poecilia formosa
ENSPFOG00000003702
I
0.728
ENSAMXG00000012274
Astyanax mexicanus
ENSAMXG00000012274
I
0.728
ENSXMAG00000003038
Xiphophorus maculatus
ENSXMAG00000003038
I
0.728
pax2a
Takifugu rubripes
ENSTRUG00000008891
I
0.728
Ogr18043
Ophisaurus gracilis
Ogr18043
I
0.726
Sjc_0065980
Schistosoma japonicum
Sjc_0065980
I
0.726
PAX2
Loxodonta africana
ENSLAFG00000002388
I
0.726
Ocbimv22010462m.g
Octopus bimaculoides
Ocbimv22010462m.g
I
0.725
DILT_0001709501
Diphyllobothrium latum
DILT_0001709501
I
0.724
Ocbimv22007526m.g
Octopus bimaculoides
Ocbimv22007526m.g
I
0.721
ENSTNIG00000005391
Tetraodon nigroviridis
ENSTNIG00000005391
I
0.720
pax2a
Danio rerio
ENSDARG00000028148
I
0.720
SPU_014539
Strongylocentrotus purpuratus
SPU_014539
I
0.720
pax2b
Takifugu rubripes
ENSTRUG00000011987
I
0.720
ENSLOCG00000012825
Lepisosteus oculatus
ENSLOCG00000012825
I
0.720
PAX5
Anolis carolinensis
ENSACAG00000011646
I
0.720
pax5.L
Xenopus laevis
XB-GENE-865318
I
0.720
Pax2
Rattus norvegicus
ENSRNOG00000014253
I
0.718
pax5
Tetraodon nigroviridis
ENSTNIG00000005085
I
0.718
ENSMEUG00000011758
Macropus eugenii
ENSMEUG00000011758
I
0.717
ENSAPLG00000014321
Anas platyrhynchos
ENSAPLG00000014321
I
0.713
Myotis_brandtii_PAX5_10017827
Myotis brandtii
Myotis_brandtii_PAX5_10017827
I
0.712
ENSCSAG00000010751
Chlorocebus sabaeus
ENSCSAG00000010751
I
0.712
Pvit_15554
Pogona vitticeps
Pvit_15554
I
0.712
PAX5
Canis familiaris
ENSCAFG00000002357
I
0.712
ENSAMXG00000005158
Astyanax mexicanus
ENSAMXG00000005158
I
0.712
PAX5
Cavia porcellus
ENSCPOG00000009987
I
0.712
ENSAMEG00000010127
Ailuropoda melanoleuca
ENSAMEG00000010127
I
0.712
PAX5
Callithrix jacchus
ENSCJAG00000010379
I
0.712
XP_002935920
Xenopus tropicalis
XP_002935920
I
0.712
PAX5
Choloepus hoffmanni
ENSCHOG00000003521
I
0.712
PAX5
Bos taurus
ENSBTAG00000012498
I
0.712
PAX5
Dasypus novemcinctus
ENSDNOG00000035956
I
0.712
PAX5
Procavia capensis
ENSPCAG00000004660
I
0.712
ENSPANG00000025475
Papio anubis
ENSPANG00000025475
I
0.712
pax5
Oryzias latipes
ENSORLG00000005326
I
0.712
PAX5
Ochotona princeps
ENSOPRG00000000734
I
0.712
ENSPFOG00000011719
Poecilia formosa
ENSPFOG00000011719
I
0.712
ENSPPYG00000019064
Pongo abelii
ENSPPYG00000019064
I
0.712
ENSSHAG00000012375
Sarcophilus harrisii
ENSSHAG00000012375
I
0.712
PAX5
Pteropus vampyrus
ENSPVAG00000000054
I
0.712
PAX5
Pan troglodytes
ENSPTRG00000020936
I
0.712
ENSPSIG00000003215
Pelodiscus sinensis
ENSPSIG00000003215
I
0.712
ENSONIG00000008952
Oreochromis niloticus
ENSONIG00000008952
I
0.712
ENSOGAG00000004773
Otolemur garnettii
ENSOGAG00000004773
I
0.712
ENSMPUG00000006012
Mustela putorius furo
ENSMPUG00000006012
I
0.712
PAX5
Monodelphis domestica
ENSMODG00000002720
I
0.712
PAX5
Myotis lucifugus
ENSMLUG00000012652
I
0.712
PAX5
Microcebus murinus
ENSMICG00000017679
I
0.712
Pax5
Mus musculus
ENSMUSG00000014030
D
0.712
ENSNLEG00000003664
Nomascus leucogenys
ENSNLEG00000003664
I
0.712
PAX5
Oryctolagus cuniculus
ENSOCUG00000012281
I
0.712
ENSOARG00000011518
Ovis aries
ENSOARG00000011518
I
0.712
PAX5
Ornithorhynchus anatinus
ENSOANG00000007579
I
0.712
ENSSSCG00000005345
Sus scrofa
ENSSSCG00000005345
I
0.712
ENSSTOG00000024354
Ictidomys tridecemlineatus
ENSSTOG00000024354
I
0.712
Aan_R002178
Calypte anna
Aan_R002178
I
0.712
pax5
Gasterosteus aculeatus
ENSGACG00000016112
I
0.712
Pax5B
Gallus gallus
ENSGALG00000016431
D
0.712
pax5
Danio rerio
ENSDARG00000037383
I
0.712
Afo_R005136
Aptenodytes forsteri
Afo_R005136
I
0.712
Alligator_sinensis_CCG012866.1
Alligator sinensis
Alligator_sinensis_CCG012866.1
I
0.712
ENSP00000350844
Macaca fascicularis
ENSP00000350844
I
0.712
ENSP00000350844-D1
Bos grunniens
ENSP00000350844-D1
I
0.712
Brh_R001926
Buceros rhinoceros
Brh_R001926
I
0.712
PAX5
Felis catus
ENSFCAG00000001628
I
0.712
PAX5
Gorilla gorilla
ENSGGOG00000003633
I
0.712
ENSXMAG00000012680
Xiphophorus maculatus
ENSXMAG00000012680
I
0.712
ENSTSYG00000001117
Tarsius syrichta
ENSTSYG00000001117
I
0.712
pax5
Takifugu rubripes
ENSTRUG00000003227
I
0.712
PAX5
Taeniopygia guttata
ENSTGUG00000007215
I
0.712
PAX5
Loxodonta africana
ENSLAFG00000028851
I
0.712
ENSFALG00000012983
Ficedula albicollis
ENSFALG00000012983
I
0.712
PAX5
Equus caballus
ENSECAG00000000551
I
0.712
PAX5
Erinaceus europaeus
ENSEEUG00000012531
I
0.712
PAX5
Echinops telfairi
ENSETEG00000002360
I
0.712
Gfo_R013093
Geospiza fortis
Gfo_R013093
I
0.712
HelroG124549
Helobdella robusta
HelroG124549
I
0.711
Pax5
Dipodomys ordii
ENSDORG00000015818
I
0.711
D917_06071
Trichinella nativa
D917_06071
I
0.706
AFUN001734
Anopheles funestus
AFUN001734
I
0.706
ASIS022893
Anopheles sinensis
ASIS022893
I
0.706
Pax5
Rattus norvegicus
ENSRNOG00000024729
I
0.704