CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AMAM005900
(
Anopheles maculatus
)
Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00292 (PAX)
IPR001523
AMAM005900
T312404_2.00
Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Poxn
M03946_2.00
Drosophila melanogaster
DGCGTGACSGTCACGSY
RSCGTGACSGTCACGCH
SELEX
Nitta et al.(2015)
Poxn_1
0.820
0.820
Poxn
M03947_2.00
Drosophila melanogaster
RSCGKGACSGTTMCGSW
WSCGKAACSGTCMCGSY
SELEX
Nitta et al.(2015)
Poxn_2
0.820
0.820
Poxn
M03948_2.00
Drosophila melanogaster
NCGTTCCGGAACGD
HCGTTCCGGAACGN
SELEX
Nitta et al.(2015)
Poxn_3
0.820
0.820
Poxn
M06437_2.00
Drosophila melanogaster
RSCGTGACG
CGTCACGSY
B1H
Zhu et al.(2011)
Poxn_SOLEXA_5_FBgn0003130
0.820
0.820
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR
YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.719
0.719
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN
NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.719
0.719
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.719
0.719
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.719
0.719
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.719
0.719
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.719
0.719
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.719
0.719
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.719
0.719
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.719
0.719
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.719
0.719
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG
CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.719
0.719
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.719
0.719
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.719
0.719
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.719
0.719
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.719
0.719
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.719
0.719
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.719
0.719
PAX5
M11210_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.719
0.719
PAX5
M11211_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.719
0.719
PAX5
M11212_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.719
0.719
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AMAM005900-PA
Paired box
51
139
GQAGVNQLGGVFVNGRPLPDIVRRRIVELALMGVRPCDISRQLLVSHGCVSKILTRFYETGSIRPGSIGGSKTKVRRPVRLQQEETFFA
Links
Other
Paired box
family TFs
Other
Anopheles maculatus
TFs
61 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AALB001179
Anopheles albimanus
AALB001179
I
1.000
AARA010781
Anopheles arabiensis
AARA010781
I
0.987
AEPI004837
Anopheles epiroticus
AEPI004837
I
0.962
ADIR011362
Anopheles dirus
ADIR011362
I
0.949
AQUA004184
Anopheles quadriannulatus
AQUA004184
I
0.948
CPIJ009206
Culex quinquefasciatus
CPIJ009206
I
0.915
CpipJ_CPIJ009206
Culex pipiens
CpipJ_CPIJ009206
I
0.915
ACHR009211
Anopheles christyi
ACHR009211
I
0.904
AFUN008226
Anopheles funestus
AFUN008226
I
0.875
CLEC006621
Cimex lectularius
CLEC006621
I
0.857
PAX5
Tursiops truncatus
ENSTTRG00000006049
I
0.855
ENSTSYG00000008085
Tarsius syrichta
ENSTSYG00000008085
I
0.855
PAX5
Tupaia belangeri
ENSTBEG00000007983
I
0.855
SBAD_0001213701
Soboliphyme baturini
SBAD_0001213701
I
0.839
AMIN007194
Anopheles minimus
AMIN007194
I
0.833
LCUP005878
Lucilia cuprina
LCUP005878
I
0.831
MDOA010966
Musca domestica
MDOA010966
I
0.831
ACUA016445
Anopheles culicifacies
ACUA016445
I
0.811
L798_15745
Zootermopsis nevadensis
L798_15745
I
0.811
YQE_05418
Dendroctonus ponderosae
YQE_05418
N
0.809
GH20564
Drosophila grimshawi
FBgn0128027
I
0.809
ISCW000175
Ixodes scapularis
ISCW000175
I
0.798
RPRC011448
Rhodnius prolixus
RPRC011448
N
0.798
OESDEN_18680
Oesophagostomum dentatum
OESDEN_18680
I
0.795
Ocbimv22007901m.g
Octopus bimaculoides
Ocbimv22007901m.g
I
0.787
Pax6
Mus musculus
ENSMUSG00000027168
D
0.786
HPBE_0000479901
Heligmosomoides bakeri
HPBE_0000479901
I
0.783
PAX8
Vicugna pacos
ENSVPAG00000003973
I
0.778
CGI_10012686
Crassostrea gigas
CGI_10012686
I
0.775
pax6a
Danio rerio
ENSDARG00000103379
I
0.771
Sjc_0077510
Schistosoma japonicum
Sjc_0077510
I
0.768
pax6b
Danio rerio
ENSDARG00000045936
I
0.766
augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0
I
0.765
Sakowv30025789m.g
Saccoglossus kowalevskii
Sakowv30025789m.g
I
0.764
Cflo_00736--XP_001122746.1_APIME
Camponotus floridanus
Cflo_00736--XP_001122746.1_APIME
I
0.764
BGLB002028
Biomphalaria glabrata
BGLB002028
I
0.750
DAPPUDRAFT_38922
Daphnia pulex
DAPPUDRAFT_38922
I
0.741
ENSTNIG00000013141
Tetraodon nigroviridis
ENSTNIG00000013141
I
0.737
ACYPI52155
Acyrthosiphon pisum
ACYPI52155
I
0.734
ACEP20056
Atta cephalotes
ACEP20056
I
0.731
LCUP013028
Lucilia cuprina
LCUP013028
I
0.727
ANCCAN_01421
Ancylostoma caninum
ANCCAN_01421
I
0.720
Pax5
Rattus norvegicus
ENSRNOG00000024729
I
0.719
pax5
Tetraodon nigroviridis
ENSTNIG00000005085
I
0.719
ENSLACG00000013159
Latimeria chalumnae
ENSLACG00000013159
I
0.719
PTRK_0001603600
Parastrongyloides trichosuri
PTRK_0001603600
I
0.719
ENSONIG00000016065
Oreochromis niloticus
ENSONIG00000016065
I
0.719
ENSPFOG00000003702
Poecilia formosa
ENSPFOG00000003702
I
0.719
PAX6
Homo sapiens
ENSG00000007372
D
0.714
LCUP015670
Lucilia cuprina
LCUP015670
I
0.714
Pax5
Mus musculus
ENSMUSG00000014030
D
0.714
SROB_0000822501
Schistosoma rodhaini
SROB_0000822501
I
0.710
SVE_0227200
Strongyloides venezuelensis
SVE_0227200
I
0.708
SPAL_0000372000
Strongyloides papillosus
SPAL_0000372000
I
0.708
SSTP_0000522800
Strongyloides stercoralis
SSTP_0000522800
I
0.708
pax2a
Danio rerio
ENSDARG00000028148
I
0.708
LotgiG135549
Lottia gigantea
LotgiG135549
I
0.708
ENSLOCG00000012825
Lepisosteus oculatus
ENSLOCG00000012825
I
0.708
ENSGMOG00000000463
Gadus morhua
ENSGMOG00000000463
I
0.708
PAX5
Anolis carolinensis
ENSACAG00000011646
I
0.708
RPRC001910
Rhodnius prolixus
RPRC001910
I
0.700