GPUH_0000812501 (Gongylonema pulchrum)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 GPUH_0000812501 T312638_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.705 0.705
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.705 0.705
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.705 0.705
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.705 0.705
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.705 0.705
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.705 0.705
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.705 0.705
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.705 0.705
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.705 0.705
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.705 0.705
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.705 0.705
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.705 0.705
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.705 0.705
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.705 0.705
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.705 0.705
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.705 0.705
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.705 0.705
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.705 0.705
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.705 0.705
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPUH_0000812501-mRNA-1 Paired box 45 132

Links

Other Paired box family TFs
Other Gongylonema pulchrum TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf45992-processed-gene-0.0 I 0.941
Pax6 Mus musculus ENSMUSG00000027168 D 0.929
OESDEN_18680 Oesophagostomum dentatum OESDEN_18680 I 0.909
ENSTSYG00000008085 Tarsius syrichta ENSTSYG00000008085 I 0.891
PAX5 Tursiops truncatus ENSTTRG00000006049 I 0.891
PAX5 Tupaia belangeri ENSTBEG00000007983 I 0.891
SBAD_0001213701 Soboliphyme baturini SBAD_0001213701 I 0.875
CLEC006621 Cimex lectularius CLEC006621 I 0.857
HPBE_0000479901 Heligmosomoides bakeri HPBE_0000479901 I 0.855
pax6b Danio rerio ENSDARG00000045936 I 0.844
ANCCAN_01421 Ancylostoma caninum ANCCAN_01421 I 0.820
PAX8 Vicugna pacos ENSVPAG00000003973 I 0.815
Sjc_0077510 Schistosoma japonicum Sjc_0077510 I 0.804
PAX6 Homo sapiens ENSG00000007372 D 0.800
DAPPUDRAFT_38922 Daphnia pulex DAPPUDRAFT_38922 I 0.796
LCUP013028 Lucilia cuprina LCUP013028 I 0.782
BGLB002028 Biomphalaria glabrata BGLB002028 I 0.781
pax6a Danio rerio ENSDARG00000103379 I 0.771
Pax5 Mus musculus ENSMUSG00000014030 D 0.771
AALB001179 Anopheles albimanus AALB001179 I 0.757
LCUP015670 Lucilia cuprina LCUP015670 I 0.750
L898_g18055 Steinernema monticolum L898_g18055 I 0.750
ENSTNIG00000013141 Tetraodon nigroviridis ENSTNIG00000013141 I 0.737
AARA010781 Anopheles arabiensis AARA010781 I 0.737
PTRK_0001603600 Parastrongyloides trichosuri PTRK_0001603600 I 0.727
AQUA004184 Anopheles quadriannulatus AQUA004184 I 0.727
ANCCEY_08417 Ancylostoma ceylanicum ANCCEY_08417 I 0.722
ADIR011362 Anopheles dirus ADIR011362 I 0.718
AEPI004837 Anopheles epiroticus AEPI004837 I 0.718
PEQ_0000701201 Parascaris equorum PEQ_0000701201 I 0.717
SPAL_0000372000 Strongyloides papillosus SPAL_0000372000 I 0.716
SSTP_0000522800 Strongyloides stercoralis SSTP_0000522800 I 0.716
SVE_0227200 Strongyloides venezuelensis SVE_0227200 I 0.716
HPLM_0000491501 Haemonchus placei HPLM_0000491501 I 0.716
SROB_0000822501 Schistosoma rodhaini SROB_0000822501 I 0.710
SMTD_0001918101 Schistosoma mattheei SMTD_0001918101 I 0.710
Pax5 Rattus norvegicus ENSRNOG00000024729 I 0.705
ENSLACG00000013159 Latimeria chalumnae ENSLACG00000013159 I 0.705
pax2a Danio rerio ENSDARG00000028148 I 0.705
RPRC001910 Rhodnius prolixus RPRC001910 I 0.700