CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HPLM_0000508801
(
Haemonchus placei
)
Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00292 (PAX)
IPR001523
HPLM_0000508801
T312719_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Poxm
M03944_2.00
Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG
SELEX
Nitta et al.(2015)
Poxm_1
0.784
0.784
Poxm
M03945_2.00
Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN
SELEX
Nitta et al.(2015)
Poxm_2
0.784
0.784
Poxm
M06436_2.00
Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN
B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129
0.784
0.784
PAX1
M03442_2.00
Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH
SELEX
Jolma et al.(2013)
PAX1_1
0.752
0.752
PAX9
M03444_2.00
Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN
SELEX
Jolma et al.(2013)
PAX9_1
0.752
0.752
PAX1
M05687_2.00
Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX
0.752
0.752
PAX9
M05689_2.00
Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV
SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX
0.752
0.752
PAX1
M11207_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX1_B
0.752
0.752
PAX1
M05688_2.00
Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX
0.752
0.752
PAX9
M05690_2.00
Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV
SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX
0.752
0.752
pax9
M11204_2.00
Danio rerio
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX9_B
0.744
0.744
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HPLM_0000508801-mRNA-1
Paired box
32
156
SIGDVNQLGGFFVNGRPLPMALRVRIIELHRSGIRPCDISRQLRISHGCVSKILSRYVERGSIEPGTIGGSKPRVTTPKVVEYIRLLKYSDPGIFSWEIRDRLVNDGICSKDSVPSVSSISRILR
Links
Other
Paired box
family TFs
Other
Haemonchus placei
TFs
228 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy