L889_g29910 (Steinernema feltiae)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 L889_g29910 T312748_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR

YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.720 0.720
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN

NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.720 0.720
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN

NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.720 0.720
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN

NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.720 0.720
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN

NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.720 0.720
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC

GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.720 0.720
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC

GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.720 0.720
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN

NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.720 0.720
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC

GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.720 0.720
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM

KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.720 0.720
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG

CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.720 0.720
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC

GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.720 0.720
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM

KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.720 0.720
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN

NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.720 0.720
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC

GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.720 0.720
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB

VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.720 0.720
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH

DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.720 0.720
PAX5
M11210_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.720 0.720
PAX5
M11211_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.720 0.720
PAX5
M11212_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.720 0.720
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN

NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.712 0.712
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM

KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.712 0.712
PAX8
M11205_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.712 0.712
PAX8
M11206_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.712 0.712
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN

NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L889_g29910.t1 Paired box 7 131

Links

Other Paired box family TFs
Other Steinernema feltiae TFs

251 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000017343 Ailuropoda melanoleuca ENSAMEG00000017343 I 0.000
Alligator_sinensis_CCG003566.1 Alligator sinensis Alligator_sinensis_CCG003566.1 I 0.000
OVOL1 Bos taurus ENSBTAG00000012656 I 0.000
e_gw.374.48.1 Branchiostoma floridae e_gw.374.48.1 I 0.000
OVOL1 Callithrix jacchus ENSCJAG00000001957 I 0.000
OVOL1 Canis familiaris ENSCAFG00000013285 I 0.000
ENSCPOG00000000009 Cavia porcellus ENSCPOG00000000009 I 0.000
ENSCSAG00000007998 Chlorocebus sabaeus ENSCSAG00000007998 I 0.000
OVOL1 Equus caballus ENSECAG00000017302 I 0.000
OVOL1 Felis catus ENSFCAG00000007902 I 0.000
OVOL1 Gorilla gorilla ENSGGOG00000008101 I 0.000
OVOL1 Homo sapiens ENSG00000172818 D 0.000
ENSSTOG00000003150 Ictidomys tridecemlineatus ENSSTOG00000003150 I 0.000
OVOL1 Loxodonta africana ENSLAFG00000015644 I 0.000
ENSP00000337862 Macaca fascicularis ENSP00000337862 I 0.000
OVOL1 Macaca mulatta ENSMMUG00000012585 I 0.000
ENSMEUG00000008765 Macropus eugenii ENSMEUG00000008765 I 0.000
ENSMICG00000013034 Microcebus murinus ENSMICG00000013034 I 0.000
OVOL1 Monodelphis domestica ENSMODG00000009534 I 0.000
ENSMPUG00000011594 Mustela putorius furo ENSMPUG00000011594 I 0.000
Ovol1 Mus musculus ENSMUSG00000024922 D 0.000
Myotis_brandtii_OVOL1_10030735 Myotis brandtii Myotis_brandtii_OVOL1_10030735 I 0.000
OVOL1 Myotis lucifugus ENSMLUG00000008789 I 0.000
ENSNLEG00000005840 Nomascus leucogenys ENSNLEG00000005840 I 0.000
OVOL1 Ornithorhynchus anatinus ENSOANG00000015786 I 0.000
OVOL1 Otolemur garnettii ENSOGAG00000016496 I 0.000
ENSOARG00000017840 Ovis aries ENSOARG00000017840 I 0.000
OVOL1 Pan troglodytes ENSPTRG00000003893 I 0.000
ENSPANG00000002371 Papio anubis ENSPANG00000002371 I 0.000
ENSPSIG00000002913 Pelodiscus sinensis ENSPSIG00000002913 I 0.000
ENSPPYG00000003049 Pongo abelii ENSPPYG00000003049 I 0.000
Ovol1 Rattus norvegicus ENSRNOG00000020669 I 0.000
OVOL1 Sus scrofa ENSSSCG00000027361 I 0.000
OVOL1 Tursiops truncatus ENSTTRG00000016929 I 0.000
ENSXMAG00000009866 Xiphophorus maculatus ENSXMAG00000009866 I 0.000