L893_g1041 (Steinernema glaseri)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 L893_g1041 T312760_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN

NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.736 0.736
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN

NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.736 0.736
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN

NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.736 0.736
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC

GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.736 0.736
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC

GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.736 0.736
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN

NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.736 0.736
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC

GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.736 0.736
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM

KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.736 0.736
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG

CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.736 0.736
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC

GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.736 0.736
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM

KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.736 0.736
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN

NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.736 0.736
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC

GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.736 0.736
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB

VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.736 0.736
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH

DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.736 0.736
PAX5
M11210_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.736 0.736
PAX5
M11211_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.736 0.736
PAX5
M11212_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.736 0.736
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN

NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.728 0.728
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM

KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.728 0.728
PAX8
M11205_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.728 0.728
PAX8
M11206_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.728 0.728
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN

NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.728 0.728
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR

YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.720 0.720
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN

NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.720 0.720
sv
M01302_2.00
Drosophila melanogaster
NNNSCRBRDM

KHYVYGSNNN
PBM
Lambert et al.(2019)
pTH9773
0.704 0.704
sv
M03949_2.00
Drosophila melanogaster
NBCRNYSAWGCGTGACS

SGTCACGCWTSRNYGVN
SELEX
Nitta et al.(2015)
sv_1
0.704 0.704
sv
M06438_2.00
Drosophila melanogaster
RNYSRDSCGTRACNN

NNGTYACGSHYSRNY
B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561
0.704 0.704
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L893_g1041.t1 Paired box 7 131

Links

Other Paired box family TFs
Other Steinernema glaseri TFs

266 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GGTG_04373 Gaeumannomyces graminis GGTG_04373 I 0.000
MGU_11431 Metarhizium guizhouense MGU_11431 N 0.000
MGU_04517 Metarhizium guizhouense MGU_04517 N 0.000
MGG_14931 Magnaporthe oryzae MGG_14931 N 0.000
MBR_06849 Metarhizium brunneum MBR_06849 N 0.000
VHEMI07268 Torrubiella hemipterigena VHEMI07268 N 0.000
MBM_01495 Marssonina brunnea MBM_01495 N 0.000
MANI_007967 Metarhizium anisopliae MANI_007967 N 0.000
MAM_04045 Metarhizium album MAM_04045 N 0.000
MAJ_06087 Metarhizium majus MAJ_06087 N 0.000
MGU_11507 Metarhizium guizhouense MGU_11507 N 0.000
OCS_01359 Ophiocordyceps sinensis OCS_01359 N 0.000
SS1G_06088 Sclerotinia sclerotiorum SS1G_06088 N 0.000
SPBR_04228 Sporothrix brasiliensis SPBR_04228 N 0.000
SBOR_9218 Sclerotinia borealis SBOR_9218 N 0.000
SAPIO_CDS4015 Scedosporium apiospermum SAPIO_CDS4015 N 0.000
S40288_06421 Stachybotrys chartarum S40288_06421 N 0.000
S40285_06378 Stachybotrys chlorohalonata S40285_06378 N 0.000
PFICI_11356 Pestalotiopsis fici PFICI_11356 N 0.000
OIDMADRAFT_39749 Oidiodendron maius OIDMADRAFT_39749 N 0.000
OIDMADRAFT_143165 Oidiodendron maius OIDMADRAFT_143165 N 0.000
MAC_00080 Metarhizium acridum MAC_00080 N 0.000
J056_003318 Wallemia ichthyophaga J056_003318 N 0.000
HMPREF1624_08636 Sporothrix schenckii HMPREF1624_08636 N 0.000
Cob_04159 Colletotrichum orbiculare Cob_04159 N 0.000
CMQ_6979 Grosmannia clavigera CMQ_6979 N 0.000
CH063_09295 Colletotrichum higginsianum CH063_09295 N 0.000
CGGC5_3572 Colletotrichum gloeosporioides CGGC5_3572 N 0.000
CFIO01_13207 Colletotrichum fioriniae CFIO01_13207 N 0.000
CCM_05149 Cordyceps militaris CCM_05149 N 0.000
Bcin05g03800 Botrytis cinerea Bcin05g03800 N 0.000
BBA_04604 Beauveria bassiana BBA_04604 N 0.000
CPUR_06395 Claviceps purpurea CPUR_06395 N 0.000
CSUB01_01824 Colletotrichum sublineola CSUB01_01824 N 0.000
DRE_07207 Drechslerella stenobrocha DRE_07207 N 0.000
H072_4102 Dactylellina haptotyla H072_4102 N 0.000
GSTUM_00003625001 Tuber melanosporum GSTUM_00003625001 N 0.000
GMDG_07394 Pseudogymnoascus destructans GMDG_07394 N 0.000
GLRG_05053 Colletotrichum graminicola GLRG_05053 N 0.000
FPSE_04979 Fusarium pseudograminearum FPSE_04979 N 0.000
FFUJ_01685 Fusarium fujikuroi FFUJ_01685 N 0.000
F503_00417 Ophiostoma piceae uamh F503_00417 N 0.000
EV44_g5376 Erysiphe necator EV44_g5376 N 0.000
AOL_s00078g21 Arthrobotrys oligospora AOL_s00078g21 N 0.000