L893_g1041 (Steinernema glaseri)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 L893_g1041 T312760_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN

NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.736 0.736
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN

NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.736 0.736
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN

NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.736 0.736
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC

GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.736 0.736
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC

GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.736 0.736
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN

NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.736 0.736
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC

GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.736 0.736
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM

KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.736 0.736
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG

CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.736 0.736
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC

GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.736 0.736
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM

KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.736 0.736
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN

NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.736 0.736
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC

GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.736 0.736
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB

VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.736 0.736
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH

DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.736 0.736
PAX5
M11210_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.736 0.736
PAX5
M11211_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.736 0.736
PAX5
M11212_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.736 0.736
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN

NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.728 0.728
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM

KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.728 0.728
PAX8
M11205_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.728 0.728
PAX8
M11206_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.728 0.728
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN

NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.728 0.728
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR

YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.720 0.720
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN

NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.720 0.720
sv
M01302_2.00
Drosophila melanogaster
NNNSCRBRDM

KHYVYGSNNN
PBM
Lambert et al.(2019)
pTH9773
0.704 0.704
sv
M03949_2.00
Drosophila melanogaster
NBCRNYSAWGCGTGACS

SGTCACGCWTSRNYGVN
SELEX
Nitta et al.(2015)
sv_1
0.704 0.704
sv
M06438_2.00
Drosophila melanogaster
RNYSRDSCGTRACNN

NNGTYACGSHYSRNY
B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561
0.704 0.704
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L893_g1041.t1 Paired box 7 131

Links

Other Paired box family TFs
Other Steinernema glaseri TFs

266 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACRE_040330 Acremonium chrysogenum ACRE_040330 I 0.000
CFIO01_10968 Colletotrichum fioriniae CFIO01_10968 I 0.000
CGGC5_9646 Colletotrichum gloeosporioides CGGC5_9646 I 0.000
CHGG_05073 Chaetomium globosum CHGG_05073 I 0.000
Cob_02407 Colletotrichum orbiculare Cob_02407 I 0.000
CSUB01_05498 Colletotrichum sublineola CSUB01_05498 I 0.000
CTHT_0031690 Chaetomium thermophilum CTHT_0031690 I 0.000
estExt_Genewise1.C_150162 Neurospora discreta estExt_Genewise1.C_150162 I 0.000
F503_06010 Ophiostoma piceae uamh F503_06010 I 0.000
FFUJ_09651 Fusarium fujikuroi FFUJ_09651 I 0.000
GGTG_13876 Gaeumannomyces graminis GGTG_13876 I 0.000
GLRG_09080 Colletotrichum graminicola GLRG_09080 I 0.000
HMPREF1624_02413 Sporothrix schenckii HMPREF1624_02413 I 0.000
MAC_04266 Metarhizium acridum MAC_04266 I 0.000
MAJ_01451 Metarhizium majus MAJ_01451 I 0.000
MAM_03050 Metarhizium album MAM_03050 I 0.000
MANI_121221 Metarhizium anisopliae MANI_121221 I 0.000
MAPG_01506 Magnaporthe poae MAPG_01506 I 0.000
MBR_04448 Metarhizium brunneum MBR_04448 I 0.000
MGG_17841 Magnaporthe oryzae MGG_17841 I 0.000
MGU_04014 Metarhizium guizhouense MGU_04014 I 0.000
MYCTH_2299680 Myceliophthora thermophila MYCTH_2299680 I 0.000
NCU10258 Neurospora crassa NCU10258 D 0.000
NEUTE1DRAFT_59287 Neurospora tetrasperma NEUTE1DRAFT_59287 I 0.000
OCS_03476 Ophiocordyceps sinensis OCS_03476 I 0.000
PFICI_12835 Pestalotiopsis fici PFICI_12835 I 0.000
PODANS_3_2470 Podospora anserina PODANS_3_2470 I 0.000
S40285_03485 Stachybotrys chlorohalonata S40285_03485 I 0.000
S40288_05480 Stachybotrys chartarum S40288_05480 I 0.000
SAPIO_CDS1545 Scedosporium apiospermum SAPIO_CDS1545 I 0.000
SPBR_03364 Sporothrix brasiliensis SPBR_03364 I 0.000
THITE_2116136 Thielavia terrestris THITE_2116136 I 0.000
TRIATDRAFT_156368 Trichoderma atroviride TRIATDRAFT_156368 I 0.000
TRIREDRAFT_74091 Trichoderma reesei TRIREDRAFT_74091 I 0.000
UV8b_1670 Ustilaginoidea virens UV8b_1670 I 0.000
VDAG_08115 Verticillium dahliae VDAG_08115 I 0.000
VDBG_08450 Verticillium alfalfae VDBG_08450 I 0.000
VDBG_08450 Verticillium albo atrum VDBG_08450 I 0.000
VHEMI09735 Torrubiella hemipterigena VHEMI09735 I 0.000
X797_005481 Metarhizium robertsii X797_005481 I 0.000