L893_g1041 (Steinernema glaseri)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 L893_g1041 T312760_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN

NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.736 0.736
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN

NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.736 0.736
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN

NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.736 0.736
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC

GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.736 0.736
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC

GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.736 0.736
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN

NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.736 0.736
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC

GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.736 0.736
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM

KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.736 0.736
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG

CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.736 0.736
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC

GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.736 0.736
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM

KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.736 0.736
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN

NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.736 0.736
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC

GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.736 0.736
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB

VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.736 0.736
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH

DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.736 0.736
PAX5
M11210_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.736 0.736
PAX5
M11211_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.736 0.736
PAX5
M11212_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.736 0.736
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN

NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.728 0.728
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM

KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.728 0.728
PAX8
M11205_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.728 0.728
PAX8
M11206_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.728 0.728
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN

NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.728 0.728
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR

YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.720 0.720
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN

NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.720 0.720
sv
M01302_2.00
Drosophila melanogaster
NNNSCRBRDM

KHYVYGSNNN
PBM
Lambert et al.(2019)
pTH9773
0.704 0.704
sv
M03949_2.00
Drosophila melanogaster
NBCRNYSAWGCGTGACS

SGTCACGCWTSRNYGVN
SELEX
Nitta et al.(2015)
sv_1
0.704 0.704
sv
M06438_2.00
Drosophila melanogaster
RNYSRDSCGTRACNN

NNGTYACGSHYSRNY
B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561
0.704 0.704
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L893_g1041.t1 Paired box 7 131

Links

Other Paired box family TFs
Other Steinernema glaseri TFs

266 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA013618 Oryza indica BGIOSGA013618 N 0.000
BGIOSGA035596 Oryza indica BGIOSGA035596 N 0.000
BGIOSGA037460 Oryza indica BGIOSGA037460 N 0.000
BRADI4G06567 Brachypodium distachyon BRADI4G06567 N 0.000
BRADI4G12615 Brachypodium distachyon BRADI4G12615 N 0.000
Ca_05643 Cicer arietinum Ca_05643 N 0.000
chr5.CM0200.490.nc Lotus japonicus chr5.CM0200.490.nc N 0.000
chr5.CM0200.500.nc Lotus japonicus chr5.CM0200.500.nc N 0.000
F775_23312 Aegilops tauschii F775_23312 N 0.000
gene12191-v1.0-hybrid Fragaria vesca gene12191-v1.0-hybrid N 0.000
GRMZM2G165188 Zea mays GRMZM2G165188 N 0.000
LPERR03G29580 Leersia perrieri LPERR03G29580 N 0.000
MDP0000876738 Malus domestica MDP0000876738 N 0.000
MTR_1g106470 Medicago truncatula MTR_1g106470 N 0.000
OB03G42180 Oryza brachyantha OB03G42180 N 0.000
OB11G25500 Oryza brachyantha OB11G25500 N 0.000
OBART11G20580 Oryza barthii OBART11G20580 N 0.000
OBART12G13380 Oryza barthii OBART12G13380 N 0.000
OGLUM03G34950 Oryza glumaepatula OGLUM03G34950 N 0.000
OGLUM11G20000 Oryza glumaepatula OGLUM11G20000 N 0.000
OGLUM12G15010 Oryza glumaepatula OGLUM12G15010 N 0.000
OLONG_003723 Oryza longistaminata OLONG_003723 N 0.000
OLONG_021754 Oryza longistaminata OLONG_021754 N 0.000
OLONG_028675 Oryza longistaminata OLONG_028675 N 0.000
OMERI03G32400 Oryza meridionalis OMERI03G32400 N 0.000
ONIVA03G36690 Oryza nivara ONIVA03G36690 N 0.000
ONIVA11G20620 Oryza nivara ONIVA11G20620 N 0.000
OPUNC03G32220 Oryza punctata OPUNC03G32220 N 0.000
OPUNC11G17200 Oryza punctata OPUNC11G17200 N 0.000
ORGLA03G0322200 Oryza glaberrima ORGLA03G0322200 N 0.000
ORGLA10G0168100 Oryza glaberrima ORGLA10G0168100 N 0.000
ORGLA11G0169400 Oryza glaberrima ORGLA11G0169400 N 0.000
ORGLA12G0196200 Oryza glaberrima ORGLA12G0196200 N 0.000
ORUFI03G36640 Oryza rufipogon ORUFI03G36640 N 0.000
ORUFI11G22390 Oryza rufipogon ORUFI11G22390 N 0.000
ORUFI12G14590 Oryza rufipogon ORUFI12G14590 N 0.000
OS11G0634700 Oryza sativa OS11G0634700 N 0.000
Pavir.Ca02388 Panicum virgatum Pavir.Ca02388 N 0.000
Pavir.Ca02532 Panicum virgatum Pavir.Ca02532 N 0.000
Pavir.Cb00430 Panicum virgatum Pavir.Cb00430 N 0.000
Pavir.Ha00126 Panicum virgatum Pavir.Ha00126 N 0.000
Pavir.Hb00249 Panicum virgatum Pavir.Hb00249 N 0.000
Pavir.Ia01481 Panicum virgatum Pavir.Ia01481 N 0.000
Pavir.Ib03951 Panicum virgatum Pavir.Ib03951 N 0.000
PGSC0003DMG400003231 Solanum tuberosum PGSC0003DMG400003231 N 0.000
Pm021173 Prunus mume Pm021173 N 0.000
PRUPE_ppa015724mg Prunus persica PRUPE_ppa015724mg N 0.000
Sb01g014580 Sorghum bicolor Sb01g014580 N 0.000
Sb08g019780 Sorghum bicolor Sb08g019780 N 0.000
Si022813m.g Setaria italica Si022813m.g N 0.000
Si024550m.g Setaria italica Si024550m.g N 0.000
Si028242m.g Setaria italica Si028242m.g N 0.000
Si038695m.g Setaria italica Si038695m.g N 0.000
Solyc10g049720.1 Solanum lycopersicum Solyc10g049720.1 N 0.000
Solyc10g049780.1 Solanum lycopersicum Solyc10g049780.1 N 0.000
TRAES3BF169000100CFD_g Triticum aestivum TRAES3BF169000100CFD_g N 0.000
Traes_3DL_801E89185 Triticum aestivum Traes_3DL_801E89185 N 0.000
TRIUR3_10349 Triticum urartu TRIUR3_10349 N 0.000