nDi.2.2.2.g03678 (Dirofilaria immitis)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 nDi.2.2.2.g03678 T312821_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR

YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.728 0.728
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN

NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.728 0.728
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN

NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.728 0.728
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN

NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.728 0.728
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN

NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.728 0.728
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC

GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.728 0.728
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC

GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.728 0.728
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN

NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.728 0.728
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC

GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.728 0.728
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM

KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.728 0.728
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG

CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.728 0.728
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC

GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.728 0.728
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM

KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.728 0.728
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN

NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.728 0.728
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC

GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.728 0.728
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB

VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.728 0.728
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH

DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.728 0.728
PAX5
M11210_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.728 0.728
PAX5
M11211_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.728 0.728
PAX5
M11212_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.728 0.728
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN

NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.720 0.720
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM

KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.720 0.720
PAX8
M11205_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.720 0.720
PAX8
M11206_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.720 0.720
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN

NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.720 0.720
sv
M01302_2.00
Drosophila melanogaster
NNNSCRBRDM

KHYVYGSNNN
PBM
Lambert et al.(2019)
pTH9773
0.704 0.704
sv
M03949_2.00
Drosophila melanogaster
NBCRNYSAWGCGTGACS

SGTCACGCWTSRNYGVN
SELEX
Nitta et al.(2015)
sv_1
0.704 0.704
sv
M06438_2.00
Drosophila melanogaster
RNYSRDSCGTRACNN

NNGTYACGSHYSRNY
B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561
0.704 0.704
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nDi.2.2.2.t03678 Paired box 22 146

Links

Other Paired box family TFs
Other Dirofilaria immitis TFs

281 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo6g107140 Brassica oleracea Bo6g107140 N 0.000
Bra004329 Brassica rapa Bra004329 N 0.000
Cla008107 Citrullus lanatus Cla008107 I 0.000
Ciclev10004036m.g Citrus clementina Ciclev10004036m.g N 0.000
orange1.1g036441m.g Citrus sinensis orange1.1g036441m.g N 0.000
GLYMA20G24766 Glycine max GLYMA20G24766 I 0.000
GLYMA10G42280 Glycine max GLYMA10G42280 I 0.000
GLYMA02G10833 Glycine max GLYMA02G10833 I 0.000
Gorai.005G092400 Gossypium raimondii Gorai.005G092400 N 0.000
LPERR07G23730 Leersia perrieri LPERR07G23730 I 0.000
Lus10009055.g Linum usitatissimum Lus10009055.g N 0.000
Lus10042005.g Linum usitatissimum Lus10042005.g N 0.000
cassava43322.valid.m1 Manihot esculenta cassava43322.valid.m1 I 0.000
cassava35768.valid.m1 Manihot esculenta cassava35768.valid.m1 I 0.000
cassava39733.m1 Manihot esculenta cassava39733.m1 I 0.000
OBART07G26940 Oryza barthii OBART07G26940 I 0.000
OB07G32440 Oryza brachyantha OB07G32440 I 0.000
ORGLA07G0213300 Oryza glaberrima ORGLA07G0213300 I 0.000
BGIOSGA026428 Oryza indica BGIOSGA026428 I 0.000
OLONG_021555 Oryza longistaminata OLONG_021555 I 0.000
ONIVA07G26680 Oryza nivara ONIVA07G26680 I 0.000
OPUNC07G25310 Oryza punctata OPUNC07G25310 I 0.000
ORUFI07G27880 Oryza rufipogon ORUFI07G27880 I 0.000
TGA2.1 Oryza sativa OS07G0687700 I 0.000
Pavir.Ba00294 Panicum virgatum Pavir.Ba00294 I 0.000
Pavir.Bb03716 Panicum virgatum Pavir.Bb03716 I 0.000
28883.m000741 Ricinus communis 28883.m000741 I 0.000
Sb02g043480 Sorghum bicolor Sb02g043480 I 0.000
Traes_1BS_E3FCA98E3 Triticum aestivum Traes_1BS_E3FCA98E3 N 0.000
Traes_1AS_412B31FC1 Triticum aestivum Traes_1AS_412B31FC1 N 0.000
GRMZM2G361847 Zea mays GRMZM2G361847 I 0.000