TRE_0000921601 (Trichobilharzia regenti)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00292 (PAX) IPR001523 TRE_0000921601 T313002_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.704 0.704
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.704 0.704
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.704 0.704
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.704 0.704
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.704 0.704
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.704 0.704
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.704 0.704
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.704 0.704
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.704 0.704
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.704 0.704
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.704 0.704
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.704 0.704
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.704 0.704
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.704 0.704
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.704 0.704
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.704 0.704
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.704 0.704
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.704 0.704
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.704 0.704
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.704 0.704
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TRE_0000921601-mRNA-1 Paired box 10 134

Links

Other Paired box family TFs
Other Trichobilharzia regenti TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ECPE_0000273501 Echinostoma caproni ECPE_0000273501 I 0.912
ECPE_0001376401 Echinostoma caproni ECPE_0001376401 I 0.895
A_03128 Schistosoma haematobium A_03128 I 0.888
D915_05709 Fasciola hepatica D915_05709 I 0.888
SCUD_0000535601 Schistosoma curassoni SCUD_0000535601 I 0.880
Sjc_0004220 Schistosoma japonicum Sjc_0004220 I 0.880
pax6a Danio rerio ENSDARG00000103379 I 0.879
DILT_0000442801 Diphyllobothrium latum DILT_0000442801 I 0.856
SSLN_0001115101 Schistocephalus solidus SSLN_0001115101 I 0.856
Ocbimv22011111m.g Octopus bimaculoides Ocbimv22011111m.g I 0.848
pax6b Gasterosteus aculeatus ENSGACG00000016030 I 0.840
nRc.2.0.1.g00894 Romanomermis culicivorax nRc.2.0.1.g00894 I 0.832
PHUM217120 Pediculus humanus PHUM217120 I 0.832
Pax6 Mus musculus ENSMUSG00000027168 D 0.832
CLEC008733 Cimex lectularius CLEC008733 I 0.830
SINV17241 Solenopsis invicta SINV17241 I 0.824
Cflo_05394--XP_001120031.1_APIME Camponotus floridanus Cflo_05394--XP_001120031.1_APIME I 0.824
DAPPUDRAFT_122807 Daphnia pulex DAPPUDRAFT_122807 I 0.824
RPRC003362 Rhodnius prolixus RPRC003362 I 0.824
pax6b Danio rerio ENSDARG00000045936 I 0.824
KGM_02181 Danaus plexippus KGM_02181 I 0.824
HMEL009702 Heliconius melpomene HMEL009702 I 0.816
ACEP24464 Atta cephalotes ACEP24464 I 0.816
RPRC001429 Rhodnius prolixus RPRC001429 I 0.816
CLEC008846 Cimex lectularius CLEC008846 I 0.808
ACEP20912 Atta cephalotes ACEP20912 N 0.808
TTAC_0000709401 Hydatigera taeniaeformis TTAC_0000709401 I 0.800
HmN_000735200 Hymenolepis microstoma HmN_000735200 N 0.800
BGLB007764 Biomphalaria glabrata BGLB007764 I 0.800
LDEC008984 Leptinotarsa decemlineata LDEC008984 I 0.800
YQE_05107 Dendroctonus ponderosae YQE_05107 I 0.800
DILT_0000606101 Diphyllobothrium latum DILT_0000606101 N 0.792
SPU_006786 Strongylocentrotus purpuratus SPU_006786 I 0.792
TsM_000804100 Taenia solium TsM_000804100 I 0.792
TCLT_0000192601 Thelazia callipaeda TCLT_0000192601 N 0.792
TASK_0000210301 Taenia asiatica TASK_0000210301 I 0.792
AMAM010937 Anopheles maculatus AMAM010937 I 0.784
ECANG7_07793 Echinococcus canadensis ECANG7_07793 I 0.784
EmuJ_000389800 Echinococcus multilocularis EmuJ_000389800 I 0.784
SPER_0000208501 Spirometra erinaceieuropaei SPER_0000208501 N 0.784
nRc.2.0.1.g30341 Romanomermis culicivorax nRc.2.0.1.g30341 I 0.784
SMTD_0001015101 Schistosoma mattheei SMTD_0001015101 N 0.784
BGIBMGA009432 Bombyx mori BGIBMGA009432 I 0.784
nDi.2.2.2.g03678 Dirofilaria immitis nDi.2.2.2.g03678 I 0.776
NECAME_04524 Necator americanus NECAME_04524 I 0.776
nOo.2.0.1.g04580 Onchocerca ochengi nOo.2.0.1.g04580 I 0.776
WBGene00241130 Onchocerca volvulus WBGene00241130 I 0.776
nAv.1.0.1.g05236 Acanthocheilonema viteae nAv.1.0.1.g05236 I 0.776
Bm14693 Brugia malayi Bm14693 I 0.776
EVEC_0000795701 Enterobius vermicularis EVEC_0000795701 I 0.776
TELCIR_00311 Teladorsagia circumcincta TELCIR_00311 I 0.776
L893_g1041 Steinernema glaseri L893_g1041 I 0.776
HDID_0000853801 Hymenolepis diminuta HDID_0000853801 N 0.776
WUBG_13045 Wuchereria bancrofti WUBG_13045 I 0.776
L596_g12356 Steinernema carpocapsae L596_g12356 I 0.768
AATE019182 Anopheles atroparvus AATE019182 I 0.768
ACOM023323 Anopheles coluzzii ACOM023323 I 0.768
PXEA_0001769401 Protopolystoma xenopodis PXEA_0001769401 N 0.768
L889_g29910 Steinernema feltiae L889_g29910 I 0.768
OFLC_0001383501 Onchocerca flexuosa OFLC_0001383501 I 0.760
nLs.2.1.2.g01338 Litomosoides sigmodontis nLs.2.1.2.g01338 N 0.760
BTMF_0000869901 Brugia timori BTMF_0000869901 N 0.760
EEL_0000889701 Elaeophora elaphi EEL_0000889701 N 0.760
ALUE_0000749601 Ascaris lumbricoides ALUE_0000749601 N 0.760
LOAG_04187 Loa loa LOAG_04187 N 0.752
DME_0000186001 Dracunculus medinensis DME_0000186001 N 0.752
Ppa-vab-3 Pristionchus pacificus PPA03442 I 0.744
scaffold478-EXSNAP2012.12 Pristionchus exspectatus scaffold478-EXSNAP2012.12 I 0.744
ASU_08112 Ascaris suum ASU_08112 N 0.744
PEQ_0001140301 Parascaris equorum PEQ_0001140301 N 0.744
CBG04481 Caenorhabditis briggsae CBG04481 I 0.736
SPU_014539 Strongylocentrotus purpuratus SPU_014539 I 0.720
Sakowv30025789m.g Saccoglossus kowalevskii Sakowv30025789m.g I 0.720
pax5 Takifugu rubripes ENSTRUG00000003227 I 0.712
ENSXMAG00000012680 Xiphophorus maculatus ENSXMAG00000012680 I 0.712
MCINX012239 Melitaea cinxia MCINX012239 I 0.712
pax2a Takifugu rubripes ENSTRUG00000008891 I 0.712
pax5 Danio rerio ENSDARG00000037383 I 0.712
ENSPFOG00000011719 Poecilia formosa ENSPFOG00000011719 I 0.712
ENSPFOG00000013202 Poecilia formosa ENSPFOG00000013202 I 0.712
ENSONIG00000018496 Oreochromis niloticus ENSONIG00000018496 I 0.712
pax2a Gasterosteus aculeatus ENSGACG00000008391 I 0.712
pax5 Tetraodon nigroviridis ENSTNIG00000005085 I 0.712
ENSGMOG00000012561 Gadus morhua ENSGMOG00000012561 I 0.712
Pax5 Rattus norvegicus ENSRNOG00000024729 I 0.712
pax2a Danio rerio ENSDARG00000028148 I 0.712
ACYPI000633 Acyrthosiphon pisum ACYPI000633 I 0.712
CGI_10024166 Crassostrea gigas CGI_10024166 I 0.712
PAX2 Loxodonta africana ENSLAFG00000002388 I 0.710
BGIBMGA013358 Bombyx mori BGIBMGA013358 I 0.710
PAX5 Felis catus ENSFCAG00000001628 I 0.704
Pax2 Rattus norvegicus ENSRNOG00000014253 I 0.704
PAX5 Homo sapiens ENSG00000196092 D 0.704
pax2b Gasterosteus aculeatus ENSGACG00000002432 I 0.704
pax2.L Xenopus laevis XB-GENE-486805 I 0.704
pax5 Gasterosteus aculeatus ENSGACG00000016112 I 0.704
PAX5 Gorilla gorilla ENSGGOG00000003633 I 0.704
PAX5 Loxodonta africana ENSLAFG00000028851 I 0.704
PAX5 Microcebus murinus ENSMICG00000017679 I 0.704
PAX2 Homo sapiens ENSG00000075891 D 0.704
ENSLACG00000013159 Latimeria chalumnae ENSLACG00000013159 I 0.704
Pax5B Gallus gallus ENSGALG00000016431 D 0.704
ENSFALG00000012983 Ficedula albicollis ENSFALG00000012983 I 0.704
Pax-2 Gallus gallus ENSGALG00000005689 I 0.704
PAX5 Erinaceus europaeus ENSEEUG00000012531 I 0.704
PAX5 Choloepus hoffmanni ENSCHOG00000003521 I 0.704
PAX5 Callithrix jacchus ENSCJAG00000010379 I 0.704
PAX5 Canis familiaris ENSCAFG00000002357 I 0.704
PAX5 Bos taurus ENSBTAG00000012498 I 0.704
ENSAMEG00000010127 Ailuropoda melanoleuca ENSAMEG00000010127 I 0.704
ENSAMXG00000012274 Astyanax mexicanus ENSAMXG00000012274 I 0.704
PAX5 Cavia porcellus ENSCPOG00000009987 I 0.704
ENSCSAG00000010751 Chlorocebus sabaeus ENSCSAG00000010751 I 0.704
PAX5 Equus caballus ENSECAG00000000551 I 0.704
ENSACAG00000011033 Anolis carolinensis ENSACAG00000011033 I 0.704
Pax5 Dipodomys ordii ENSDORG00000015818 I 0.704
pax2b Danio rerio ENSDARG00000032578 D 0.704
PAX5 Myotis lucifugus ENSMLUG00000012652 I 0.704
PAX5 Echinops telfairi ENSETEG00000002360 I 0.704
Pax5 Mus musculus ENSMUSG00000014030 D 0.704
ENSPFOG00000003702 Poecilia formosa ENSPFOG00000003702 I 0.704
ENSPPYG00000019064 Pongo abelii ENSPPYG00000019064 I 0.704
PAX8 Pan troglodytes ENSPTRG00000012380 I 0.704
PAX5 Procavia capensis ENSPCAG00000004660 I 0.704
ENSPANG00000025475 Papio anubis ENSPANG00000025475 I 0.704
Afo_R005136 Aptenodytes forsteri Afo_R005136 I 0.704
Aan_R002178 Calypte anna Aan_R002178 I 0.704
pax5 Oryzias latipes ENSORLG00000005326 I 0.704
PAX5 Pan troglodytes ENSPTRG00000020936 I 0.704
PAX5 Pteropus vampyrus ENSPVAG00000000054 I 0.704
ENSXMAG00000003038 Xiphophorus maculatus ENSXMAG00000003038 I 0.704
ENSTSYG00000001117 Tarsius syrichta ENSTSYG00000001117 I 0.704
pax2b Takifugu rubripes ENSTRUG00000011987 I 0.704
PAX5 Taeniopygia guttata ENSTGUG00000007215 I 0.704
ENSSTOG00000024354 Ictidomys tridecemlineatus ENSSTOG00000024354 I 0.704
KGM_12316 Danaus plexippus KGM_12316 I 0.704
ENSSSCG00000005345 Sus scrofa ENSSSCG00000005345 I 0.704
Brh_R001926 Buceros rhinoceros Brh_R001926 I 0.704
PAX5 Ochotona princeps ENSOPRG00000000734 I 0.704
pax2 Xenopus tropicalis XB-GENE-486801 D 0.704
ENSOARG00000011518 Ovis aries ENSOARG00000011518 I 0.704
PAX5 Oryctolagus cuniculus ENSOCUG00000012281 I 0.704
XP_002935920 Xenopus tropicalis XP_002935920 I 0.704
PAX5 Ornithorhynchus anatinus ENSOANG00000007579 I 0.704
ENSMPUG00000006012 Mustela putorius furo ENSMPUG00000006012 I 0.704
ENSNLEG00000003664 Nomascus leucogenys ENSNLEG00000003664 I 0.704
ENSOGAG00000004773 Otolemur garnettii ENSOGAG00000004773 I 0.704
ENSONIG00000008952 Oreochromis niloticus ENSONIG00000008952 I 0.704
Gfo_R013093 Geospiza fortis Gfo_R013093 I 0.704
ENSP00000350844 Macaca fascicularis ENSP00000350844 I 0.704
ENSP00000350844-D1 Bos grunniens ENSP00000350844-D1 I 0.704
Myotis_brandtii_PAX5_10017827 Myotis brandtii Myotis_brandtii_PAX5_10017827 I 0.704
Ogr18043 Ophisaurus gracilis Ogr18043 I 0.704
ENSONIG00000016065 Oreochromis niloticus ENSONIG00000016065 I 0.704
Pvit_15554 Pogona vitticeps Pvit_15554 I 0.704
PAX5 Monodelphis domestica ENSMODG00000002720 I 0.704