lcorl (Danio rerio)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSDARG00000070098 T313538_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human LCORL (ligand dependent nuclear receptor corepressor like). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LCORL
M01304_2.00 		Homo sapiens
HYNAAWHN
NDWTTNRD		 PBM
Lambert et al.(2019)
pTH11267 		0.825 0.825
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000093375 Pipsqueak 49 84
ENSDARP00000128036 Pipsqueak 235 270
ENSDARP00000128036 Pipsqueak 492 537
ENSDARP00000133930 Pipsqueak 240 275
ENSDARP00000133930 Pipsqueak 484 529

Links

Other Pipsqueak family TFs
Other Danio rerio TFs

Invalid Input OrderBy

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action