LCORL (Homo sapiens)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSG00000178177 T313553_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LCORL
M01304_2.00
Homo sapiens
HYNAAWHN

NDWTTNRD
PBM
Lambert et al.(2019)
pTH11267
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LCORL
M02431_2.00
Choloepus hoffmanni
NNYNAAHNN

NNDTTNRNN
PBM
Weirauch et al.(2014)
pTH9253
1.000 1.000
ENSMGAG00000009953
M02433_2.00
Meleagris gallopavo
NNNYNAAWNN

NNWTTNRNNN
PBM
Weirauch et al.(2014)
pTH8649
0.800 0.800
ENSORLG00000000044
M02434_2.00
Oryzias latipes
CCCAAAWT

AWTTTGGG
PBM
Weirauch et al.(2014)
pTH9275
0.800 0.800
lcorl
M02438_2.00
Xenopus tropicalis
NYCNAAWHN

NDWTTNGRN
PBM
Weirauch et al.(2014)
pTH8558
0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01304_2.00 Pipsqueak 51 89
M01304_2.00 Pipsqueak 300 345

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000371659 Pipsqueak 193 231
ENSP00000371659 Pipsqueak 442 487
ENSP00000371661 Pipsqueak 526 571

Links

Other Pipsqueak family TFs
Other Homo sapiens TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O1_06908 Capronia coronata A1O1_06908 I 0.000
A1O3_10521 Capronia epimyces A1O3_10521 I 0.000
A1O9_06785 Exophiala aquamarina A1O9_06785 I 0.000
ACRE_014300 Acremonium chrysogenum ACRE_014300 I 0.000
AOL_s00140g62 Arthrobotrys oligospora AOL_s00140g62 I 0.000
BBA_01414 Beauveria bassiana BBA_01414 I 0.000
Bcin05g02780 Botrytis cinerea Bcin05g02780 I 0.000
BDDG_07206 Blastomyces dermatitidis BDDG_07206 I 0.000
BGHDH14_bgh03098 Blumeria graminis BGHDH14_bgh03098 I 0.000
ACLA_091060 Aspergillus clavatus CADACLAG00008741 I 0.000
CADAFLAG00008913 Aspergillus flavus CADAFLAG00008913 I 0.000
AFUA_2G03460 Aspergillus fumigatus CADAFUAG00003363 I 0.000
CADANGAG00006067 Aspergillus niger CADANGAG00006067 I 0.000
ANIA_04486 Aspergillus nidulans CADANIAG00005959 I 0.000
CADAORAG00011392 Aspergillus oryzae CADAORAG00011392 I 0.000
ATEG_09543 Aspergillus terreus CADATEAG00004294 I 0.000
NFIA_035810 Neosartorya fischeri CADNFIAG00003215 I 0.000
CCM_00085 Cordyceps militaris CCM_00085 I 0.000
CFIO01_08387 Colletotrichum fioriniae CFIO01_08387 I 0.000
CGGC5_8879 Colletotrichum gloeosporioides CGGC5_8879 I 0.000
CH063_09643 Colletotrichum higginsianum CH063_09643 I 0.000
CIMG_04520 Coccidioides immitis CIMG_04520 I 0.000
CMQ_1121 Grosmannia clavigera CMQ_1121 I 0.000
Cob_13285 Colletotrichum orbiculare Cob_13285 I 0.000
COCC4DRAFT_53548 Bipolaris maydis COCC4DRAFT_53548 I 0.000
COCCADRAFT_37638 Bipolaris zeicola COCCADRAFT_37638 I 0.000
COCMIDRAFT_36857 Bipolaris oryzae COCMIDRAFT_36857 I 0.000
COCSADRAFT_116952 Bipolaris sorokiniana COCSADRAFT_116952 I 0.000
COCVIDRAFT_97328 Bipolaris victoriae COCVIDRAFT_97328 I 0.000
CPC735_072600 Coccidioides posadasii CPC735_072600 I 0.000
CPUR_00123 Claviceps purpurea CPUR_00123 I 0.000
CSUB01_06778 Colletotrichum sublineola CSUB01_06778 I 0.000
CTHT_0058750 Chaetomium thermophilum CTHT_0058750 I 0.000
DRE_07274 Drechslerella stenobrocha DRE_07274 I 0.000
EPUS_07641 Endocarpon pusillum EPUS_07641 I 0.000
estExt_Genewise1Plus.C_20576 Neurospora discreta estExt_Genewise1Plus.C_20576 I 0.000
estExt_Genewise1Plus.C_270143 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_270143 I 0.000
EURHEDRAFT_400169 Aspergillus ruber EURHEDRAFT_400169 I 0.000
EV44_g6013 Erysiphe necator EV44_g6013 I 0.000
e_gw1.1.122.1 Nectria haematococca e_gw1.1.122.1 I 0.000
F503_03035 Ophiostoma piceae uamh F503_03035 I 0.000
FFUJ_00519 Fusarium fujikuroi FFUJ_00519 I 0.000
fgenesh1_pm.00009_#_164 Aspergillus carbonarius fgenesh1_pm.00009_#_164 I 0.000
FGRRES_00719 Fusarium graminearum FGRRES_00719 I 0.000
FOXG_01048 Fusarium oxysporum FOXG_01048 I 0.000
FPSE_00332 Fusarium pseudograminearum FPSE_00332 I 0.000
GGTG_00361 Gaeumannomyces graminis GGTG_00361 I 0.000
GLRG_00601 Colletotrichum graminicola GLRG_00601 I 0.000
GMDG_07312 Pseudogymnoascus destructans GMDG_07312 I 0.000
gw1.6.911.1 Cryphonectria parasitica gw1.6.911.1 I 0.000
H072_4151 Dactylellina haptotyla H072_4151 I 0.000
H101_06817 Trichophyton interdigitale H101_06817 I 0.000
H102_02066 Trichophyton rubrum H102_02066 I 0.000
H105_02085 Trichophyton soudanense H105_02085 I 0.000
HCBG_00443 Histoplasma capsulatum HCBG_00443 I 0.000
HMPREF1120_04416 Exophiala dermatitidis HMPREF1120_04416 I 0.000
HMPREF1624_07062 Sporothrix schenckii HMPREF1624_07062 I 0.000
LEMA_P067560.1 Leptosphaeria maculans LEMA_P067560.1 I 0.000
MAJ_07134 Metarhizium majus MAJ_07134 I 0.000
MAPG_07499 Magnaporthe poae MAPG_07499 I 0.000
MBM_03894 Marssonina brunnea MBM_03894 I 0.000
MBR_08359 Metarhizium brunneum MBR_08359 I 0.000
MGG_00672 Magnaporthe oryzae MGG_00672 I 0.000
MGU_03630 Metarhizium guizhouense MGU_03630 I 0.000
MGYG_02745 Microsporum gypseum MGYG_02745 I 0.000
MYCTH_2294353 Myceliophthora thermophila MYCTH_2294353 I 0.000
vad-2 Neurospora crassa NCU02094 D 0.000
NechaG31073 Fusarium solani NechaG31073 I 0.000
NEUTE1DRAFT_149383 Neurospora tetrasperma NEUTE1DRAFT_149383 I 0.000
OIDMADRAFT_128988 Oidiodendron maius OIDMADRAFT_128988 I 0.000
OIDMADRAFT_129597 Oidiodendron maius OIDMADRAFT_129597 I 0.000
PAAG_06733 Paracoccidioides sp lutzii PAAG_06733 I 0.000
PABG_01031 Paracoccidioides brasiliensis PABG_01031 I 0.000
Pc18g04740 Penicillium chrysogenum Pc18g04740 I 0.000
PCH_Pc18g04740 Penicillium rubens PCH_Pc18g04740 I 0.000
PDE_05300 Penicillium oxalicum PDE_05300 I 0.000
PDIP_71520 Penicillium digitatum PDIP_71520 I 0.000
PEX1_086470 Penicillium expansum PEX1_086470 I 0.000
PFICI_13275 Pestalotiopsis fici PFICI_13275 I 0.000
PITC_092050 Penicillium italicum PITC_092050 I 0.000
PMAA_003840 Talaromyces marneffei PMAA_003840 I 0.000
PMAA_003840 Penicillium marneffei PMAA_003840 I 0.000
PMAA_046980 Talaromyces marneffei PMAA_046980 I 0.000
PMAA_046980 Penicillium marneffei PMAA_046980 I 0.000
PTRG_10320 Pyrenophora triticirepentis PTRG_10320 I 0.000
PTT_13781 Pyrenophora teres PTT_13781 I 0.000
PV04_02143 Capronia semiimmersa PV04_02143 I 0.000
PV05_07550 Exophiala xenobiotica PV05_07550 I 0.000
PV06_07805 Exophiala oligosperma PV06_07805 I 0.000
PV07_02432 Cladophialophora immunda PV07_02432 I 0.000
PV08_03313 Exophiala spinifera PV08_03313 I 0.000
PV10_03556 Exophiala mesophila PV10_03556 I 0.000
PV11_03679 Exophiala sideris PV11_03679 I 0.000
PVAR5_2013 Byssochlamys spectabilis PVAR5_2013 I 0.000
S40285_06808 Stachybotrys chlorohalonata S40285_06808 I 0.000
S40288_06943 Stachybotrys chartarum S40288_06943 I 0.000
SAPIO_CDS7657 Scedosporium apiospermum SAPIO_CDS7657 I 0.000
SBOR_0836 Sclerotinia borealis SBOR_0836 I 0.000
SETTUDRAFT_134649 Setosphaeria turcica SETTUDRAFT_134649 I 0.000
SMAC_04990 Sordaria macrospora SMAC_04990 I 0.000
SNOG_00452 Stagonospora nodorum SNOG_00452 I 0.000
SNOG_00452 Phaeosphaeria nodorum SNOG_00452 I 0.000
SPBR_06677 Sporothrix brasiliensis SPBR_06677 I 0.000
SS1G_05760 Sclerotinia sclerotiorum SS1G_05760 I 0.000
TESG_05591 Trichophyton tonsurans TESG_05591 I 0.000
TRIATDRAFT_80549 Trichoderma atroviride TRIATDRAFT_80549 I 0.000
TRIREDRAFT_108872 Trichoderma reesei TRIREDRAFT_108872 I 0.000
TRIVIDRAFT_33222 Trichoderma virens TRIVIDRAFT_33222 I 0.000
TSTA_036550 Talaromyces stipitatus TSTA_036550 I 0.000
TSTA_101630 Talaromyces stipitatus TSTA_101630 I 0.000
UV8b_1944 Ustilaginoidea virens UV8b_1944 I 0.000
V499_06303 Pseudogymnoascus pannorum V499_06303 I 0.000
VHEMI05022 Torrubiella hemipterigena VHEMI05022 I 0.000
W97_06511 Coniosporium apollinis W97_06511 I 0.000
X797_006259 Metarhizium robertsii X797_006259 I 0.000
Z517_00029 Fonsecaea pedrosoi Z517_00029 I 0.000
Z518_02832 Rhinocladiella mackenziei Z518_02832 I 0.000
Z519_12680 Cladophialophora bantiana Z519_12680 I 0.000