LCORL (Homo sapiens)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSG00000178177 T313553_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
This gene encodes a transcription factor that appears to function in spermatogenesis. Polymorphisms in this gene are associated with measures of skeletal frame size and adult height. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2009]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LCORL
M01304_2.00
Homo sapiens
HYNAAWHN

NDWTTNRD
PBM
Lambert et al.(2019)
pTH11267
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LCORL
M02431_2.00
Choloepus hoffmanni
NNYNAAHNN

NNDTTNRNN
PBM
Weirauch et al.(2014)
pTH9253
1.000 1.000
ENSMGAG00000009953
M02433_2.00
Meleagris gallopavo
NNNYNAAWNN

NNWTTNRNNN
PBM
Weirauch et al.(2014)
pTH8649
0.800 0.800
ENSORLG00000000044
M02434_2.00
Oryzias latipes
CCCAAAWT

AWTTTGGG
PBM
Weirauch et al.(2014)
pTH9275
0.800 0.800
lcorl
M02438_2.00
Xenopus tropicalis
NYCNAAWHN

NDWTTNGRN
PBM
Weirauch et al.(2014)
pTH8558
0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01304_2.00 Pipsqueak 51 89
M01304_2.00 Pipsqueak 300 345

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000371659 Pipsqueak 193 231
ENSP00000371659 Pipsqueak 442 487
ENSP00000371661 Pipsqueak 526 571

Links

Other Pipsqueak family TFs
Other Homo sapiens TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000000186 Ailuropoda melanoleuca ENSAMEG00000000186 I 0.800
ENSAMEG00000000192 Ailuropoda melanoleuca ENSAMEG00000000192 I 1.000
Alligator_sinensis_CCG020164.1 Alligator sinensis Alligator_sinensis_CCG020164.1 I 0.800
Alligator_sinensis_CCG006744.1 Alligator sinensis Alligator_sinensis_CCG006744.1 I 0.988
ENSAPLG00000006384 Anas platyrhynchos ENSAPLG00000006384 I 0.988
ENSAPLG00000003032 Anas platyrhynchos ENSAPLG00000003032 I 0.800
LCORL Anolis carolinensis ENSACAG00000002012 I 0.988
Afo_R002709 Aptenodytes forsteri Afo_R002709 I 0.800
Afo_R006360 Aptenodytes forsteri Afo_R006360 I 0.988
ENSAMXG00000021599 Astyanax mexicanus ENSAMXG00000021599 I 0.800
ENSBTAP00000005261-D1 Bos grunniens ENSBTAP00000005261-D1 I 0.800
ENSP00000371661-D1 Bos grunniens ENSP00000371661-D1 I 0.988
LCORL Bos taurus ENSBTAG00000046561 I 0.988
ENSBTAG00000004029 Bos taurus ENSBTAG00000004029 I 0.800
Brh_R001506 Buceros rhinoceros Brh_R001506 I 0.800
Brh_R013202 Buceros rhinoceros Brh_R013202 I 0.988
ENSCJAG00000016484 Callithrix jacchus ENSCJAG00000016484 I 0.800
LCORL Callithrix jacchus ENSCJAG00000012800 I 0.988
Aan_R012556 Calypte anna Aan_R012556 I 0.800
Aan_R007397 Calypte anna Aan_R007397 I 1.000
LCORL Canis familiaris ENSCAFG00000016672 I 0.988
ENSCAFG00000008905 Canis familiaris ENSCAFG00000008905 I 0.800
ENSCPOG00000003269 Cavia porcellus ENSCPOG00000003269 I 0.988
ENSCPOG00000005739 Cavia porcellus ENSCPOG00000005739 I 0.800
Cmyd_10003742 Chelonia mydas Cmyd_10003742 I 0.800
ENSCSAG00000006043 Chlorocebus sabaeus ENSCSAG00000006043 I 0.800
ENSCSAG00000016522 Chlorocebus sabaeus ENSCSAG00000016522 I 1.000
LCORL Choloepus hoffmanni ENSCHOG00000006922 D 1.000
ENSCHOG00000001981 Choloepus hoffmanni ENSCHOG00000001981 I 0.800
lcorl Danio rerio ENSDARG00000070098 I 0.825
lcor Danio rerio ENSDARG00000100908 I 0.822
LCORL Dasypus novemcinctus ENSDNOG00000001545 I 0.988
ENSDORG00000003797 Dipodomys ordii ENSDORG00000003797 I 1.000
ENSETEG00000015066 Echinops telfairi ENSETEG00000015066 I 0.800
ENSECAG00000013517 Equus caballus ENSECAG00000013517 I 0.800
LCORL Equus caballus ENSECAG00000000648 I 1.000
LCORL Erinaceus europaeus ENSEEUG00000000419 I 1.000
LCORL Felis catus ENSFCAG00000029474 I 1.000
ENSFCAG00000028121 Felis catus ENSFCAG00000028121 I 0.800
ENSFALG00000008484 Ficedula albicollis ENSFALG00000008484 I 0.800
ENSFALG00000009227 Ficedula albicollis ENSFALG00000009227 I 0.988
ENSGALG00000023649 Gallus gallus ENSGALG00000023649 I 0.800
LCORL Gallus gallus ENSGALG00000014421 I 0.988
Gfo_R002325 Geospiza fortis Gfo_R002325 I 0.800
Gfo_R010322 Geospiza fortis Gfo_R010322 I 0.988
LCORL Gorilla gorilla ENSGGOG00000014894 I 0.988
ENSGGOG00000026110 Gorilla gorilla ENSGGOG00000026110 I 0.800
LCOR Homo sapiens ENSG00000196233 I 0.800
ENSSTOG00000000960 Ictidomys tridecemlineatus ENSSTOG00000000960 I 1.000
ENSSTOG00000010808 Ictidomys tridecemlineatus ENSSTOG00000010808 I 0.800
ENSLACG00000017771 Latimeria chalumnae ENSLACG00000017771 I 0.976
ENSLOCG00000012823 Lepisosteus oculatus ENSLOCG00000012823 I 0.800
LCORL Loxodonta africana ENSLAFG00000009691 I 0.976
ENSLAFG00000014271 Loxodonta africana ENSLAFG00000014271 I 0.800
ENSP00000371661 Macaca fascicularis ENSP00000371661 I 1.000
ENSP00000360138 Macaca fascicularis ENSP00000360138 I 0.800
ENSMMUG00000010425 Macaca mulatta ENSMMUG00000010425 I 0.800
ENSMGAG00000009953 Meleagris gallopavo ENSMGAG00000009953 D 0.800
LCORL Meleagris gallopavo ENSMGAG00000012554 I 0.988
ENSMICG00000007572 Microcebus murinus ENSMICG00000007572 I 0.800
ENSMICG00000008878 Microcebus murinus ENSMICG00000008878 I 1.000
ENSMODG00000004531 Monodelphis domestica ENSMODG00000004531 I 0.800
LCORL Monodelphis domestica ENSMODG00000000757 I 0.988
ENSMPUG00000002301 Mustela putorius furo ENSMPUG00000002301 I 0.988
Lcorl Mus musculus ENSMUSG00000015882 I 1.000
Lcor Mus musculus ENSMUSG00000025019 I 0.800
Myotis_brandtii_LCOR_10025723 Myotis brandtii Myotis_brandtii_LCOR_10025723 I 0.800
Myotis_brandtii_LCORL_10024398 Myotis brandtii Myotis_brandtii_LCORL_10024398 I 1.000
Myotis_brandtii_LCORL_10024397 Myotis brandtii Myotis_brandtii_LCORL_10024397 I 1.000
ENSMLUG00000000494 Myotis lucifugus ENSMLUG00000000494 I 0.800
LCORL Myotis lucifugus ENSMLUG00000013781 I 1.000
ENSNLEG00000016679 Nomascus leucogenys ENSNLEG00000016679 I 1.000
ENSNLEG00000013648 Nomascus leucogenys ENSNLEG00000013648 I 0.800
ENSOPRG00000014745 Ochotona princeps ENSOPRG00000014745 I 0.800
Ogr00836 Ophisaurus gracilis Ogr00836 I 0.988
Ogr16502 Ophisaurus gracilis Ogr16502 I 0.800
ENSONIG00000000255 Oreochromis niloticus ENSONIG00000000255 I 0.800
LCORL Oryctolagus cuniculus ENSOCUG00000006802 I 0.988
ENSORLG00000000044 Oryzias latipes ENSORLG00000000044 D 0.800
ENSOGAG00000008137 Otolemur garnettii ENSOGAG00000008137 I 0.800
LCORL Otolemur garnettii ENSOGAG00000005593 I 0.988
ENSOARG00000008725 Ovis aries ENSOARG00000008725 I 0.800
ENSOARG00000004333 Ovis aries ENSOARG00000004333 I 0.988
LCOR Pan troglodytes ENSPTRG00000002800 I 0.800
LCORL Pan troglodytes ENSPTRG00000015943 I 0.988
ENSPANG00000024022 Papio anubis ENSPANG00000024022 I 0.988
ENSPSIG00000009179 Pelodiscus sinensis ENSPSIG00000009179 I 0.800
ENSPSIG00000017051 Pelodiscus sinensis ENSPSIG00000017051 I 0.988
ENSPFOG00000009902 Poecilia formosa ENSPFOG00000009902 I 0.800
Pvit_17823 Pogona vitticeps Pvit_17823 I 0.800
Pvit_18026 Pogona vitticeps Pvit_18026 I 0.988
LCORL Procavia capensis ENSPCAG00000007105 I 1.000
ENSPCAG00000007084 Procavia capensis ENSPCAG00000007084 I 0.800
LCORL Pteropus vampyrus ENSPVAG00000013601 I 1.000
ENSPVAG00000003364 Pteropus vampyrus ENSPVAG00000003364 I 0.800
Lcor Rattus norvegicus ENSRNOG00000042679 I 0.800
ENSSHAG00000015746 Sarcophilus harrisii ENSSHAG00000015746 I 1.000
ENSSHAG00000018667 Sarcophilus harrisii ENSSHAG00000018667 I 0.800
ENSSARG00000008230 Sorex araneus ENSSARG00000008230 I 0.800
ENSSSCG00000010511 Sus scrofa ENSSSCG00000010511 I 0.800
LCORL Sus scrofa ENSSSCG00000008748 I 0.988
ENSTGUG00000009834 Taeniopygia guttata ENSTGUG00000009834 I 0.800
LCORL Taeniopygia guttata ENSTGUG00000009625 I 0.988
ENSTSYG00000014055 Tarsius syrichta ENSTSYG00000014055 I 1.000
ENSTBEG00000005837 Tupaia belangeri ENSTBEG00000005837 I 0.800
LCORL Tupaia belangeri ENSTBEG00000012926 I 1.000
LCORL Tursiops truncatus ENSTTRG00000016951 I 1.000
ENSTTRG00000009856 Tursiops truncatus ENSTTRG00000009856 I 0.800
Tal_R001804 Tyto alba Tal_R001804 I 0.988
Tal_R010723 Tyto alba Tal_R010723 I 0.800
ENSVPAG00000007583 Vicugna pacos ENSVPAG00000007583 I 0.800
LCORL Vicugna pacos ENSVPAG00000010356 I 1.000
lcorl Xenopus tropicalis XB-GENE-995017 D 0.800
ENSXMAG00000005637 Xiphophorus maculatus ENSXMAG00000005637 I 0.800