LCORL (Tupaia belangeri)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSTBEG00000012926 T313623_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LCORL
M02431_2.00
Choloepus hoffmanni
NNYNAAHNN

NNDTTNRNN
PBM
Weirauch et al.(2014)
pTH9253
1.000 1.000
ENSMGAG00000009953
M02433_2.00
Meleagris gallopavo
NNNYNAAWNN

NNWTTNRNNN
PBM
Weirauch et al.(2014)
pTH8649
0.800 0.800
ENSORLG00000000044
M02434_2.00
Oryzias latipes
CCCAAAWT

AWTTTGGG
PBM
Weirauch et al.(2014)
pTH9275
0.800 0.800
lcorl
M02438_2.00
Xenopus tropicalis
NYCNAAWHN

NDWTTNGRN
PBM
Weirauch et al.(2014)
pTH8558
0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTBEP00000011199 Pipsqueak 439 484

Links

Other Pipsqueak family TFs
Other Tupaia belangeri TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CIMG_01975 Coccidioides immitis CIMG_01975 N 0.000
PMAA_044660 Talaromyces marneffei PMAA_044660 N 0.000
PV05_08167 Exophiala xenobiotica PV05_08167 N 0.000
PV06_09810 Exophiala oligosperma PV06_09810 N 0.000
PV08_08241 Exophiala spinifera PV08_08241 N 0.000
UV8b_7991 Ustilaginoidea virens UV8b_7991 N 0.000
VHEMI07193 Torrubiella hemipterigena VHEMI07193 N 0.000
X797_001626 Metarhizium robertsii X797_001626 N 0.000
Z518_05670 Rhinocladiella mackenziei Z518_05670 N 0.000
estExt_fgenesh1_pg.C_10519 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_10519 N 0.000
fgenesh1_pg.sca_3_chr4_2_0000778 Nectria haematococca fgenesh1_pg.sca_3_chr4_2_0000778 N 0.000
NechaG79377 Fusarium solani NechaG79377 N 0.000
MGU_01815 Metarhizium guizhouense MGU_01815 N 0.000
CPC735_045540 Coccidioides posadasii CPC735_045540 N 0.000
EPUS_07403 Endocarpon pusillum EPUS_07403 N 0.000
H101_06719 Trichophyton interdigitale H101_06719 N 0.000
HMPREF1541_08601 Cyphellophora europaea HMPREF1541_08601 N 0.000
M438DRAFT_371887 Aureobasidium pullulans M438DRAFT_371887 N 0.000
MAC_00374 Metarhizium acridum MAC_00374 N 0.000
MAJ_01124 Metarhizium majus MAJ_01124 N 0.000
MAM_02440 Metarhizium album MAM_02440 N 0.000
MANI_008594 Metarhizium anisopliae MANI_008594 N 0.000
MBR_01140 Metarhizium brunneum MBR_01140 N 0.000
PMAA_044660 Penicillium marneffei PMAA_044660 N 0.000