lcor (Takifugu rubripes)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSTRUG00000006194 T313628_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ENSMGAG00000009953
M02433_2.00
Meleagris gallopavo
NNNYNAAWNN

NNWTTNRNNN
PBM
Weirauch et al.(2014)
pTH8649
0.939 0.939
ENSORLG00000000044
M02434_2.00
Oryzias latipes
CCCAAAWT

AWTTTGGG
PBM
Weirauch et al.(2014)
pTH9275
0.956 0.956
lcorl
M02438_2.00
Xenopus tropicalis
NYCNAAWHN

NDWTTNGRN
PBM
Weirauch et al.(2014)
pTH8558
0.911 0.911
ENSACAG00000012432
M02430_2.00
Anolis carolinensis
NNNCNAAWNN

NNWTTNGNNN
PBM
Weirauch et al.(2014)
pTH9220
0.889 0.889
ENSORLG00000007805
M02435_2.00
Oryzias latipes
SCNAAWNNNN

NNNNWTTNGS
PBM
Weirauch et al.(2014)
pTH9277
0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000015075 Pipsqueak 508 553
ENSTRUP00000015076 Pipsqueak 272 304
ENSTRUP00000015077 Pipsqueak 422 467
ENSTRUP00000015078 Pipsqueak 372 417

Links

Other Pipsqueak family TFs
Other Takifugu rubripes TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
lcor Tetraodon nigroviridis ENSTNIG00000003614 I 1.000
ENSXMAG00000005637 Xiphophorus maculatus ENSXMAG00000005637 I 0.956
ENSPFOG00000009902 Poecilia formosa ENSPFOG00000009902 I 0.956
ENSORLG00000000044 Oryzias latipes ENSORLG00000000044 D 0.956
ENSONIG00000000255 Oreochromis niloticus ENSONIG00000000255 I 0.956
ENSSTOG00000010808 Ictidomys tridecemlineatus ENSSTOG00000010808 I 0.939
ENSTBEG00000005837 Tupaia belangeri ENSTBEG00000005837 I 0.939
ENSTGUG00000009834 Taeniopygia guttata ENSTGUG00000009834 I 0.939
ENSSSCG00000010511 Sus scrofa ENSSSCG00000010511 I 0.939
Lcor Rattus norvegicus ENSRNOG00000042679 I 0.939
ENSPSIG00000009179 Pelodiscus sinensis ENSPSIG00000009179 I 0.939
ENSPCAG00000007084 Procavia capensis ENSPCAG00000007084 I 0.939
LCOR Pan troglodytes ENSPTRG00000002800 I 0.939
ENSPVAG00000003364 Pteropus vampyrus ENSPVAG00000003364 I 0.939
ENSSARG00000008230 Sorex araneus ENSSARG00000008230 I 0.939
ENSSHAG00000018667 Sarcophilus harrisii ENSSHAG00000018667 I 0.939
ENSTTRG00000009856 Tursiops truncatus ENSTTRG00000009856 I 0.939
Gfo_R002325 Geospiza fortis Gfo_R002325 I 0.939
ENSP00000360138 Macaca fascicularis ENSP00000360138 I 0.939
Myotis_brandtii_LCOR_10025723 Myotis brandtii Myotis_brandtii_LCOR_10025723 I 0.939
Ogr16502 Ophisaurus gracilis Ogr16502 I 0.939
Tal_R010723 Tyto alba Tal_R010723 I 0.939
Pvit_17823 Pogona vitticeps Pvit_17823 I 0.939
ENSBTAP00000005261-D1 Bos grunniens ENSBTAP00000005261-D1 I 0.939
Cmyd_10003742 Chelonia mydas Cmyd_10003742 I 0.939
Aan_R012556 Calypte anna Aan_R012556 I 0.939
ENSVPAG00000007583 Vicugna pacos ENSVPAG00000007583 I 0.939
Afo_R002709 Aptenodytes forsteri Afo_R002709 I 0.939
Alligator_sinensis_CCG020164.1 Alligator sinensis Alligator_sinensis_CCG020164.1 I 0.939
Brh_R001506 Buceros rhinoceros Brh_R001506 I 0.939
ENSOGAG00000008137 Otolemur garnettii ENSOGAG00000008137 I 0.939
ENSOPRG00000014745 Ochotona princeps ENSOPRG00000014745 I 0.939
ENSETEG00000015066 Echinops telfairi ENSETEG00000015066 I 0.939
ENSEEUG00000007507 Erinaceus europaeus ENSEEUG00000007507 N 0.939
ENSECAG00000013517 Equus caballus ENSECAG00000013517 I 0.939
ENSFALG00000008484 Ficedula albicollis ENSFALG00000008484 I 0.939
ENSFCAG00000028121 Felis catus ENSFCAG00000028121 I 0.939
ENSOARG00000008725 Ovis aries ENSOARG00000008725 I 0.939
LCOR Homo sapiens ENSG00000196233 I 0.939
ENSCSAG00000006043 Chlorocebus sabaeus ENSCSAG00000006043 I 0.939
ENSCPOG00000005739 Cavia porcellus ENSCPOG00000005739 I 0.939
ENSAPLG00000003032 Anas platyrhynchos ENSAPLG00000003032 I 0.939
ENSAMEG00000000186 Ailuropoda melanoleuca ENSAMEG00000000186 I 0.939
ENSBTAG00000004029 Bos taurus ENSBTAG00000004029 I 0.939
ENSCAFG00000008905 Canis familiaris ENSCAFG00000008905 I 0.939
ENSCJAG00000016484 Callithrix jacchus ENSCJAG00000016484 I 0.939
ENSCHOG00000001981 Choloepus hoffmanni ENSCHOG00000001981 I 0.939
ENSGGOG00000026110 Gorilla gorilla ENSGGOG00000026110 I 0.939
ENSGALG00000023649 Gallus gallus ENSGALG00000023649 I 0.939
ENSMLUG00000000494 Myotis lucifugus ENSMLUG00000000494 I 0.939
ENSMICG00000007572 Microcebus murinus ENSMICG00000007572 I 0.939
ENSMODG00000004531 Monodelphis domestica ENSMODG00000004531 I 0.939
Lcor Mus musculus ENSMUSG00000025019 I 0.939
ENSNLEG00000013648 Nomascus leucogenys ENSNLEG00000013648 I 0.939
ENSMGAG00000009953 Meleagris gallopavo ENSMGAG00000009953 D 0.939
ENSMMUG00000010425 Macaca mulatta ENSMMUG00000010425 I 0.939
ENSLAFG00000014271 Loxodonta africana ENSLAFG00000014271 I 0.939
lcor Danio rerio ENSDARG00000100908 I 0.933
ENSLOCG00000012823 Lepisosteus oculatus ENSLOCG00000012823 I 0.911
lcorl Xenopus tropicalis XB-GENE-995017 D 0.911
ENSLACG00000001265 Latimeria chalumnae ENSLACG00000001265 I 0.911
ENSACAG00000012432 Anolis carolinensis ENSACAG00000012432 D 0.889
ENSAMXG00000021599 Astyanax mexicanus ENSAMXG00000021599 I 0.889
ENSTRUG00000008704 Takifugu rubripes ENSTRUG00000008704 I 0.864
ENSONIG00000018331 Oreochromis niloticus ENSONIG00000018331 I 0.844
ENSPFOG00000013017 Poecilia formosa ENSPFOG00000013017 I 0.822
ENSGMOG00000018278 Gadus morhua ENSGMOG00000018278 I 0.822
ENSXMAG00000002515 Xiphophorus maculatus ENSXMAG00000002515 I 0.822
ENSORLG00000007805 Oryzias latipes ENSORLG00000007805 D 0.800
ENSPMAG00000003112 Petromyzon marinus ENSPMAG00000003112 I 0.800
ENSGACG00000007469 Gasterosteus aculeatus ENSGACG00000007469 D 0.795