ENSXMAG00000005637 (Xiphophorus maculatus)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSXMAG00000005637 T313637_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ENSORLG00000000044
M02434_2.00
Oryzias latipes
CCCAAAWT

AWTTTGGG
PBM
Weirauch et al.(2014)
pTH9275
1.000 1.000
ENSMGAG00000009953
M02433_2.00
Meleagris gallopavo
NNNYNAAWNN

NNWTTNRNNN
PBM
Weirauch et al.(2014)
pTH8649
0.911 0.911
lcorl
M02438_2.00
Xenopus tropicalis
NYCNAAWHN

NDWTTNGRN
PBM
Weirauch et al.(2014)
pTH8558
0.911 0.911
ENSACAG00000012432
M02430_2.00
Anolis carolinensis
NNNCNAAWNN

NNWTTNGNNN
PBM
Weirauch et al.(2014)
pTH9220
0.867 0.867
LCORL
M02431_2.00
Choloepus hoffmanni
NNYNAAHNN

NNDTTNRNN
PBM
Weirauch et al.(2014)
pTH9253
0.800 0.800
ENSORLG00000007805
M02435_2.00
Oryzias latipes
SCNAAWNNNN

NNNNWTTNGS
PBM
Weirauch et al.(2014)
pTH9277
0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000005657 Pipsqueak 476 521

Links

Other Pipsqueak family TFs
Other Xiphophorus maculatus TFs

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73 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action