CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh_scip_prom.46568.1708
(
Phytophthora kernoviae
)
Pipsqueak
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF05225 (HTH_psq)
IPR007889
fgenesh_scip_prom.46568.1708
T313760_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Phyra78816
M02437_2.00
Phytophthora ramorum
NNYRNWACAN
NTGTWNYRNN
PBM
Weirauch et al.(2014)
pTH7817
0.854
0.854
For this family, TFs with SR scores >
0.778
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh_scip_prom.46568.1708
Pipsqueak
255
296
PETWENAIAAVEQQGMSLRSAAKMYGVHFAALHRRVKKRAQG
Links
Other
Pipsqueak
family TFs
Other
Phytophthora kernoviae
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
estExt_fgenesh1_kg.C_140377
Phytophthora capsici
estExt_fgenesh1_kg.C_140377
I
0.950
PITG_11246
Phytophthora infestans
PITG_11246
I
0.925
fgenesh_scip_prom.28083.10252
Phytophthora lateralis
fgenesh_scip_prom.28083.10252
I
0.925
Physo143676
Phytophthora sojae
Physo143676
I
0.925
Physo143675
Phytophthora sojae
Physo143675
I
0.925
Phyra78816
Phytophthora ramorum
Phyra78816
D
0.897
Phyra95221
Phytophthora ramorum
Phyra95221
I
0.897
PITG_00015
Phytophthora infestans
PITG_00015
I
0.857
PITG_00016
Phytophthora infestans
PITG_00016
I
0.818