Alligator_sinensis_CCG020164.1 (Alligator sinensis)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 Alligator_sinensis_CCG020164.1 T314417_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ENSMGAG00000009953
M02433_2.00
Meleagris gallopavo
NNNYNAAWNN

NNWTTNRNNN
PBM
Weirauch et al.(2014)
pTH8649
1.000 1.000
ENSACAG00000012432
M02430_2.00
Anolis carolinensis
NNNCNAAWNN

NNWTTNGNNN
PBM
Weirauch et al.(2014)
pTH9220
0.956 0.956
lcorl
M02438_2.00
Xenopus tropicalis
NYCNAAWHN

NDWTTNGRN
PBM
Weirauch et al.(2014)
pTH8558
0.956 0.956
ENSORLG00000000044
M02434_2.00
Oryzias latipes
CCCAAAWT

AWTTTGGG
PBM
Weirauch et al.(2014)
pTH9275
0.911 0.911
ENSGACG00000007469
M02432_2.00
Gasterosteus aculeatus
NVNMGAWACH

DGTWTCKNBN
PBM
Weirauch et al.(2014)
pTH9179
0.822 0.822
ENSORLG00000007805
M02435_2.00
Oryzias latipes
SCNAAWNNNN

NNNNWTTNGS
PBM
Weirauch et al.(2014)
pTH9277
0.822 0.822
LCORL
M02431_2.00
Choloepus hoffmanni
NNYNAAHNN

NNDTTNRNN
PBM
Weirauch et al.(2014)
pTH9253
0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG020164.1 Pipsqueak 350 395

Links

Other Pipsqueak family TFs
Other Alligator sinensis TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CFIO01_06545 Colletotrichum fioriniae CFIO01_06545 I 0.000
CGGC5_4998 Colletotrichum gloeosporioides CGGC5_4998 I 0.000
GLRG_02566 Colletotrichum graminicola GLRG_02566 I 0.000
CH063_11331 Colletotrichum higginsianum CH063_11331 I 0.000
FFUJ_06263 Fusarium fujikuroi FFUJ_06263 I 0.000
FGRRES_08791 Fusarium graminearum FGRRES_08791 I 0.000
FOXG_03048 Fusarium oxysporum FOXG_03048 I 0.000
FPSE_11956 Fusarium pseudograminearum FPSE_11956 I 0.000
NechaG91829 Fusarium solani NechaG91829 I 0.000
FVEG_01911 Fusarium verticillioides FVEG_01911 I 0.000
fgenesh1_pm.sca_2_chr3_3_0000229 Nectria haematococca fgenesh1_pm.sca_2_chr3_3_0000229 I 0.000
NCU02173 Neurospora crassa NCU02173 D 0.000
estExt_Genewise1.C_20387 Neurospora discreta estExt_Genewise1.C_20387 I 0.000
SAPIO_CDS9919 Scedosporium apiospermum SAPIO_CDS9919 I 0.000
SMAC_05275 Sordaria macrospora SMAC_05275 I 0.000
VHEMI04212 Torrubiella hemipterigena VHEMI04212 I 0.000