CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cflo_07901--XP_001120712.1_APIME
(
Camponotus floridanus
)
Pipsqueak
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF05225 (HTH_psq)
IPR007889
Cflo_07901--XP_001120712.1_APIME
T314425_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BtbVII
M03951_2.00
Drosophila melanogaster
RKDGBAYATR
YATRTVCHMY
SELEX
Nitta et al.(2015)
BtbVII_1
0.844
0.844
BtbVII
M03952_2.00
Drosophila melanogaster
ATGTAYHWWWGTACAT
ATGTACWWWDRTACAT
SELEX
Nitta et al.(2015)
BtbVII_2
0.844
0.844
For this family, TFs with SR scores >
0.778
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cflo_07901--XP_001120712.1_APIME
Pipsqueak
380
425
ADENFIRALDAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNR
Links
Other
Pipsqueak
family TFs
Other
Camponotus floridanus
TFs
45 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy