|
ENSBTAP00000005261-D1
(Bos grunniens)
Pipsqueak
|
TF Information |
Pfam ID |
Interpro ID |
Gene ID |
CIS-BP ID |
Sequence source |
PF05225 (HTH_psq) |
IPR007889 |
ENSBTAP00000005261-D1 |
T314434_2.00 |
GigaDB (2015-Oct-22) |
NCBI Gene Info:This gene encodes a tumor suppressor protein containing transcriptional activation, DNA binding, and oligomerization domains. The encoded protein responds to diverse cellular stresses to regulate expression of target genes, thereby inducing cell cycle arrest, apoptosis, senescence, DNA repair, or changes in metabolism. Mutations in this gene are associated with a variety of human cancers, including hereditary cancers such as Li-Fraumeni syndrome. Alternative splicing of this gene and the use of alternate promoters result in multiple transcript variants and isoforms. Additional isoforms have also been shown to result from the use of alternate translation initiation codons from identical transcript variants (PMIDs: 12032546, 20937277). [provided by RefSeq, Dec 2016] |
Directly determined binding motifs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
No direct experiments |
|
|
|
|
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Motifs from related TFs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
ENSMGAG00000009953
M02433_2.00 |
Meleagris gallopavo |
NNNYNAAWNN |
NNWTTNRNNN |
PBM
Weirauch et al.(2014)
pTH8649
|
1.000
|
1.000
|
ENSACAG00000012432
M02430_2.00 |
Anolis carolinensis |
NNNCNAAWNN |
NNWTTNGNNN |
PBM
Weirauch et al.(2014)
pTH9220
|
0.956
|
0.956
|
lcorl
M02438_2.00 |
Xenopus tropicalis |
NYCNAAWHN |
NDWTTNGRN |
PBM
Weirauch et al.(2014)
pTH8558
|
0.956
|
0.956
|
ENSORLG00000000044
M02434_2.00 |
Oryzias latipes |
CCCAAAWT |
AWTTTGGG |
PBM
Weirauch et al.(2014)
pTH9275
|
0.911
|
0.911
|
ENSGACG00000007469
M02432_2.00 |
Gasterosteus aculeatus |
NVNMGAWACH |
DGTWTCKNBN |
PBM
Weirauch et al.(2014)
pTH9179
|
0.822
|
0.822
|
ENSORLG00000007805
M02435_2.00 |
Oryzias latipes |
SCNAAWNNNN |
NNNNWTTNGS |
PBM
Weirauch et al.(2014)
pTH9277
|
0.822
|
0.822
|
LCORL
M02431_2.00 |
Choloepus hoffmanni |
NNYNAAHNN |
NNDTTNRNN |
PBM
Weirauch et al.(2014)
pTH9253
|
0.800
|
0.800
|
For this family, TFs with SR scores > 0.778 will likely have a similar motif |