CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Gfo_R010322
(
Geospiza fortis
)
Pipsqueak
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF05225 (HTH_psq)
IPR007889
Gfo_R010322
T314439_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LCORL
M01304_2.00
Homo sapiens
HYNAAWHN
NDWTTNRD
PBM
Lambert et al.(2019)
pTH11267
1.000
1.000
For this family, TFs with SR scores >
0.778
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gfo_R010322
Pipsqueak
226
263
DGLLSKALKDIQSGALDINKAGILYGIPQKTLLLHLEA
Gfo_R010322
Pipsqueak
475
520
DHEIMEEAIAMVMSGKMSVSKAQGIYGVPHSTLEYKVKERSGTLKT
Links
Other
Pipsqueak
family TFs
Other
Geospiza fortis
TFs
52 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy