CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Myotis_brandtii_LCORL_10024398
(
Myotis brandtii
)
Pipsqueak
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF05225 (HTH_psq)
IPR007889
Myotis_brandtii_LCORL_10024398
T314458_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LCORL
M02431_2.00
Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN
PBM
Weirauch et al.(2014)
pTH9253
1.000
1.000
ENSMGAG00000009953
M02433_2.00
Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN
PBM
Weirauch et al.(2014)
pTH8649
0.800
0.800
ENSORLG00000000044
M02434_2.00
Oryzias latipes
CCCAAAWT
AWTTTGGG
PBM
Weirauch et al.(2014)
pTH9275
0.800
0.800
lcorl
M02438_2.00
Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN
PBM
Weirauch et al.(2014)
pTH8558
0.800
0.800
For this family, TFs with SR scores >
0.778
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Myotis_brandtii_LCORL_10024398
Pipsqueak
61
106
DHEIMEEAIAMVMSGKMSVSKAQGIYGVPHSTLEYKVKERSGTLKT
Links
Other
Pipsqueak
family TFs
Other
Myotis brandtii
TFs
62 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy