Bo2g134600 (Brassica oleracea)
PLATZ

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04640 (PLATZ) IPR006734 Bo2g134600 T315238_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G01818
M07247_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
AT2G01818_col_a
0.885 0.885
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g134600.1 PLATZ 67 144

Links

Other PLATZ family TFs
Other Brassica oleracea TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo7g078820 Brassica oleracea Bo7g078820 I 0.974
Cagra.2235s0037 Capsella grandiflora Cagra.2235s0037 I 0.949
Carubv10017978m.g Capsella rubella Carubv10017978m.g I 0.949
fgenesh2_kg.5__89__AT2G01818.1 Arabidopsis lyrata fgenesh2_kg.5__89__AT2G01818.1 I 0.949
Bostr.0556s0005 Boechera stricta Bostr.0556s0005 I 0.949
Thhalv10005480m.g Eutrema salsugineum Thhalv10005480m.g I 0.936
AT2G01818 Arabidopsis thaliana AT2G01818 D 0.885
PK02661.1 Cannabis sativa PK02661.1 I 0.756
evm.TU.supercontig_2.160 Carica papaya evm.TU.supercontig_2.160 I 0.731
Gorai.013G029900 Gossypium raimondii Gorai.013G029900 I 0.718
orange1.1g027579m.g Citrus sinensis orange1.1g027579m.g N 0.718
Ciclev10016611m.g Citrus clementina Ciclev10016611m.g N 0.718
Eucgr.G02080 Eucalyptus grandis Eucgr.G02080 I 0.718
SapurV1A.0015s0650 Salix purpurea SapurV1A.0015s0650 I 0.709
POPTR_0010s11410 Populus trichocarpa POPTR_0010s11410 I 0.705
POPTR_0008s13660 Populus trichocarpa POPTR_0008s13660 I 0.705
29968.m000644 Ricinus communis 29968.m000644 I 0.705
Lus10013242.g Linum usitatissimum Lus10013242.g I 0.705
Gorai.005G152700 Gossypium raimondii Gorai.005G152700 I 0.705