29968.m000644 (Ricinus communis)
PLATZ

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04640 (PLATZ) IPR006734 29968.m000644 T315862_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G01818
M07247_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
AT2G01818_col_a
0.731 0.731
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29968.m000644 PLATZ 66 143

Links

Other PLATZ family TFs
Other Ricinus communis TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava20325.m1 Manihot esculenta cassava20325.m1 I 0.962
Pm005894 Prunus mume Pm005894 I 0.923
PRUPE_ppa011075mg Prunus persica PRUPE_ppa011075mg I 0.923
TCM_011266 Theobroma cacao TCM_011266 I 0.910
MDP0000290118 Malus domestica MDP0000290118 I 0.910
Gorai.005G152700 Gossypium raimondii Gorai.005G152700 I 0.910
Gorai.013G029900 Gossypium raimondii Gorai.013G029900 I 0.910
SapurV1A.0015s0650 Salix purpurea SapurV1A.0015s0650 I 0.897
POPTR_0008s13660 Populus trichocarpa POPTR_0008s13660 I 0.897
POPTR_0010s11410 Populus trichocarpa POPTR_0010s11410 I 0.885
Lus10013242.g Linum usitatissimum Lus10013242.g I 0.872
SapurV1A.0055s0220 Salix purpurea SapurV1A.0055s0220 I 0.872
Eucgr.G02080 Eucalyptus grandis Eucgr.G02080 I 0.872
Gorai.008G170500 Gossypium raimondii Gorai.008G170500 I 0.872
orange1.1g027579m.g Citrus sinensis orange1.1g027579m.g N 0.859
Ciclev10016611m.g Citrus clementina Ciclev10016611m.g N 0.859
evm.TU.supercontig_2.160 Carica papaya evm.TU.supercontig_2.160 I 0.846
cassava40347.m1 Manihot esculenta cassava40347.m1 N 0.846
Lus10030763.g Linum usitatissimum Lus10030763.g I 0.846
VIT_01s0011g06060 Vitis vinifera VIT_01s0011g06060 N 0.842
PK02661.1 Cannabis sativa PK02661.1 I 0.833
Cla005897 Citrullus lanatus Cla005897 N 0.808
Cucsa.012070 Cucumis sativus Cucsa.012070 N 0.808
Lus10028998.g Linum usitatissimum Lus10028998.g N 0.782
PGSC0003DMG400029466 Solanum tuberosum PGSC0003DMG400029466 N 0.779
mgf026615m Mimulus guttatus mgf026615m N 0.772
Solyc04g008090.2 Solanum lycopersicum Solyc04g008090.2 N 0.769
Lus10003680.g Linum usitatissimum Lus10003680.g N 0.769
Thhalv10005480m.g Eutrema salsugineum Thhalv10005480m.g I 0.744
Bostr.0556s0005 Boechera stricta Bostr.0556s0005 I 0.744
fgenesh2_kg.5__89__AT2G01818.1 Arabidopsis lyrata fgenesh2_kg.5__89__AT2G01818.1 I 0.744
Carubv10017978m.g Capsella rubella Carubv10017978m.g I 0.744
Cagra.2235s0037 Capsella grandiflora Cagra.2235s0037 I 0.744
Bo7g078820 Brassica oleracea Bo7g078820 I 0.731
AT2G01818 Arabidopsis thaliana AT2G01818 D 0.731
Bo2g134600 Brassica oleracea Bo2g134600 I 0.705