Gorai.013G029900 (Gossypium raimondii)
PLATZ

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04640 (PLATZ) IPR006734 Gorai.013G029900 T316072_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G01818
M07247_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT2G01818_col_a 		0.718 0.718
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.013G029900.1 PLATZ 65 142
Gorai.013G029900.2 PLATZ 65 142

Links

Other PLATZ family TFs
Other Gossypium raimondii TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.005G152700 Gossypium raimondii Gorai.005G152700 I 0.949
TCM_011266 Theobroma cacao TCM_011266 I 0.949
29968.m000644 Ricinus communis 29968.m000644 I 0.910
Gorai.008G170500 Gossypium raimondii Gorai.008G170500 I 0.885
orange1.1g027579m.g Citrus sinensis orange1.1g027579m.g N 0.872
Ciclev10016611m.g Citrus clementina Ciclev10016611m.g N 0.872
cassava20325.m1 Manihot esculenta cassava20325.m1 I 0.872
evm.TU.supercontig_2.160 Carica papaya evm.TU.supercontig_2.160 I 0.859
Eucgr.G02080 Eucalyptus grandis Eucgr.G02080 I 0.859
Lus10013242.g Linum usitatissimum Lus10013242.g I 0.846
Pm005894 Prunus mume Pm005894 I 0.846
PRUPE_ppa011075mg Prunus persica PRUPE_ppa011075mg I 0.846
MDP0000290118 Malus domestica MDP0000290118 I 0.833
Lus10030763.g Linum usitatissimum Lus10030763.g I 0.833
SapurV1A.0015s0650 Salix purpurea SapurV1A.0015s0650 I 0.821
SapurV1A.0055s0220 Salix purpurea SapurV1A.0055s0220 I 0.821
POPTR_0008s13660 Populus trichocarpa POPTR_0008s13660 I 0.821
POPTR_0010s11410 Populus trichocarpa POPTR_0010s11410 I 0.821
PK02661.1 Cannabis sativa PK02661.1 I 0.808
Cucsa.012070 Cucumis sativus Cucsa.012070 N 0.782
VIT_01s0011g06060 Vitis vinifera VIT_01s0011g06060 N 0.782
cassava40347.m1 Manihot esculenta cassava40347.m1 N 0.782
Cla005897 Citrullus lanatus Cla005897 N 0.782
Thhalv10005480m.g Eutrema salsugineum Thhalv10005480m.g I 0.756
Bostr.0556s0005 Boechera stricta Bostr.0556s0005 I 0.756
fgenesh2_kg.5__89__AT2G01818.1 Arabidopsis lyrata fgenesh2_kg.5__89__AT2G01818.1 I 0.756
Carubv10017978m.g Capsella rubella Carubv10017978m.g I 0.756
Cagra.2235s0037 Capsella grandiflora Cagra.2235s0037 I 0.756
Bo7g078820 Brassica oleracea Bo7g078820 I 0.744
Lus10028998.g Linum usitatissimum Lus10028998.g N 0.744
mgf026615m Mimulus guttatus mgf026615m N 0.731
Bo2g134600 Brassica oleracea Bo2g134600 I 0.718
Lus10003680.g Linum usitatissimum Lus10003680.g N 0.718
AT2G01818 Arabidopsis thaliana AT2G01818 D 0.718
PGSC0003DMG400029466 Solanum tuberosum PGSC0003DMG400029466 N 0.718
Solyc04g008090.2 Solanum lycopersicum Solyc04g008090.2 N 0.718