Lus10013242.g (Linum usitatissimum)
PLATZ

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04640 (PLATZ) IPR006734 Lus10013242.g T316084_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G01818
M07247_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT2G01818_col_a 		0.744 0.744
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10013242 PLATZ 164 241

Links

Other PLATZ family TFs
Other Linum usitatissimum TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10030763.g Linum usitatissimum Lus10030763.g I 0.910
29968.m000644 Ricinus communis 29968.m000644 I 0.872
cassava20325.m1 Manihot esculenta cassava20325.m1 I 0.846
Gorai.013G029900 Gossypium raimondii Gorai.013G029900 I 0.846
Gorai.005G152700 Gossypium raimondii Gorai.005G152700 I 0.833
Gorai.008G170500 Gossypium raimondii Gorai.008G170500 I 0.833
TCM_011266 Theobroma cacao TCM_011266 I 0.821
evm.TU.supercontig_2.160 Carica papaya evm.TU.supercontig_2.160 I 0.808
Pm005894 Prunus mume Pm005894 I 0.808
POPTR_0008s13660 Populus trichocarpa POPTR_0008s13660 I 0.808
SapurV1A.0055s0220 Salix purpurea SapurV1A.0055s0220 I 0.808
POPTR_0010s11410 Populus trichocarpa POPTR_0010s11410 I 0.808
SapurV1A.0015s0650 Salix purpurea SapurV1A.0015s0650 I 0.808
PRUPE_ppa011075mg Prunus persica PRUPE_ppa011075mg I 0.808
MDP0000290118 Malus domestica MDP0000290118 I 0.795
Ciclev10016611m.g Citrus clementina Ciclev10016611m.g N 0.795
orange1.1g027579m.g Citrus sinensis orange1.1g027579m.g N 0.795
cassava40347.m1 Manihot esculenta cassava40347.m1 N 0.795
Eucgr.G02080 Eucalyptus grandis Eucgr.G02080 I 0.795
Lus10028998.g Linum usitatissimum Lus10028998.g N 0.782
Lus10003680.g Linum usitatissimum Lus10003680.g N 0.769
PK02661.1 Cannabis sativa PK02661.1 I 0.744
Thhalv10005480m.g Eutrema salsugineum Thhalv10005480m.g I 0.744
Bostr.0556s0005 Boechera stricta Bostr.0556s0005 I 0.744
fgenesh2_kg.5__89__AT2G01818.1 Arabidopsis lyrata fgenesh2_kg.5__89__AT2G01818.1 I 0.744
Carubv10017978m.g Capsella rubella Carubv10017978m.g I 0.744
AT2G01818 Arabidopsis thaliana AT2G01818 D 0.744
Cagra.2235s0037 Capsella grandiflora Cagra.2235s0037 I 0.744
Bo7g078820 Brassica oleracea Bo7g078820 I 0.731
Cla005897 Citrullus lanatus Cla005897 N 0.731
Cucsa.012070 Cucumis sativus Cucsa.012070 N 0.731
mgf026615m Mimulus guttatus mgf026615m N 0.718
VIT_01s0011g06060 Vitis vinifera VIT_01s0011g06060 N 0.718
Bo2g134600 Brassica oleracea Bo2g134600 I 0.705
PGSC0003DMG400029466 Solanum tuberosum PGSC0003DMG400029466 N 0.705