Lus10030763.g (Linum usitatissimum)
PLATZ

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04640 (PLATZ) IPR006734 Lus10030763.g T316091_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G01818
M07247_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
AT2G01818_col_a
0.718 0.718
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10030763 PLATZ 108 185

Links

Other PLATZ family TFs
Other Linum usitatissimum TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lus10013242.g Linum usitatissimum Lus10013242.g I 0.910
29968.m000644 Ricinus communis 29968.m000644 I 0.846
Gorai.013G029900 Gossypium raimondii Gorai.013G029900 I 0.833
Gorai.008G170500 Gossypium raimondii Gorai.008G170500 I 0.821
Gorai.005G152700 Gossypium raimondii Gorai.005G152700 I 0.821
cassava20325.m1 Manihot esculenta cassava20325.m1 I 0.821
TCM_011266 Theobroma cacao TCM_011266 I 0.808
SapurV1A.0015s0650 Salix purpurea SapurV1A.0015s0650 I 0.795
Lus10028998.g Linum usitatissimum Lus10028998.g N 0.795
evm.TU.supercontig_2.160 Carica papaya evm.TU.supercontig_2.160 I 0.795
POPTR_0010s11410 Populus trichocarpa POPTR_0010s11410 I 0.795
POPTR_0008s13660 Populus trichocarpa POPTR_0008s13660 I 0.795
SapurV1A.0055s0220 Salix purpurea SapurV1A.0055s0220 I 0.795
Pm005894 Prunus mume Pm005894 I 0.795
PRUPE_ppa011075mg Prunus persica PRUPE_ppa011075mg I 0.795
Eucgr.G02080 Eucalyptus grandis Eucgr.G02080 I 0.782
Ciclev10016611m.g Citrus clementina Ciclev10016611m.g N 0.782
orange1.1g027579m.g Citrus sinensis orange1.1g027579m.g N 0.782
MDP0000290118 Malus domestica MDP0000290118 I 0.782
cassava40347.m1 Manihot esculenta cassava40347.m1 N 0.782
Lus10003680.g Linum usitatissimum Lus10003680.g N 0.744
PK02661.1 Cannabis sativa PK02661.1 I 0.744
VIT_01s0011g06060 Vitis vinifera VIT_01s0011g06060 N 0.724
Thhalv10005480m.g Eutrema salsugineum Thhalv10005480m.g I 0.718
Cagra.2235s0037 Capsella grandiflora Cagra.2235s0037 I 0.718
Cla005897 Citrullus lanatus Cla005897 N 0.718
fgenesh2_kg.5__89__AT2G01818.1 Arabidopsis lyrata fgenesh2_kg.5__89__AT2G01818.1 I 0.718
Carubv10017978m.g Capsella rubella Carubv10017978m.g I 0.718
Cucsa.012070 Cucumis sativus Cucsa.012070 N 0.718
Bostr.0556s0005 Boechera stricta Bostr.0556s0005 I 0.718
AT2G01818 Arabidopsis thaliana AT2G01818 D 0.718
Bo7g078820 Brassica oleracea Bo7g078820 I 0.705