Thhalv10005480m.g (Eutrema salsugineum)
PLATZ

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04640 (PLATZ) IPR006734 Thhalv10005480m.g T316187_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G01818
M07247_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
AT2G01818_col_a
0.949 0.949
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10005480m PLATZ 68 145

Links

Other PLATZ family TFs
Other Eutrema salsugineum TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACOC_0000915001 Angiostrongylus costaricensis ACOC_0000915001 I 0.000
ASU_01844 Ascaris suum ASU_01844 I 0.000
augustus_masked-nMf.1.1.scaf03615-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf03615-processed-gene-0.0 I 0.000
augustus_masked-nMf.1.1.scaf24077-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf24077-processed-gene-0.0 I 0.000
Bm4783 Brugia malayi Bm4783 I 0.000
Bm8986 Brugia malayi Bm8986 I 0.000
BTMF_0000353901 Brugia timori BTMF_0000353901 N 0.000
BXY_1419700 Bursaphelenchus xylophilus BXY_1419700 I 0.000
CBG14292 Caenorhabditis briggsae CBG14292 D 0.000
CBN20375 Caenorhabditis brenneri CBN20375 I 0.000
CJA08800 Caenorhabditis japonica CJA08800 I 0.000
CRE00363 Caenorhabditis remanei CRE00363 I 0.000
DICVIV_10547 Dictyocaulus viviparus DICVIV_10547 I 0.000
EEL_0001062601 Elaeophora elaphi EEL_0001062601 I 0.000
fkh-9 Caenorhabditis elegans WBGene00001441 D 0.000
GPLIN_000643600 Globodera pallida GPLIN_000643600 I 0.000
HPBE_0000630601 Heligmosomoides bakeri HPBE_0000630601 I 0.000
L596_g16187 Steinernema carpocapsae L596_g16187 I 0.000
L889_g19578 Steinernema feltiae L889_g19578 I 0.000
L892_g2712 Steinernema scapterisci L892_g2712 I 0.000
L898_g14202 Steinernema monticolum L898_g14202 I 0.000
LOAG_12342 Loa loa LOAG_12342 I 0.000
MhA1_Contig2150.frz3.gene5 Meloidogyne hapla MhA1_Contig2150.frz3.gene5 I 0.000
Minc17526 Meloidogyne incognita Minc17526 I 0.000
nAv.1.0.1.g04501 Acanthocheilonema viteae nAv.1.0.1.g04501 N 0.000
nDi.2.2.2.g08148 Dirofilaria immitis nDi.2.2.2.g08148 I 0.000
NECAME_09893 Necator americanus NECAME_09893 I 0.000
nLs.2.1.2.g09806 Litomosoides sigmodontis nLs.2.1.2.g09806 I 0.000
nOo.2.0.1.g12019 Onchocerca ochengi nOo.2.0.1.g12019 N 0.000
OESDEN_00259 Oesophagostomum dentatum OESDEN_00259 I 0.000
PTRK_0001396400 Parastrongyloides trichosuri PTRK_0001396400 I 0.000
RSKR_0000258500 Rhabditophanes kr3021 RSKR_0000258500 I 0.000
SMUV_0001043901 Syphacia muris SMUV_0001043901 I 0.000
SPAL_0000170000 Strongyloides papillosus SPAL_0000170000 I 0.000
SSTP_0001187300 Strongyloides stercoralis SSTP_0001187300 I 0.000
TCLT_0000649001 Thelazia callipaeda TCLT_0000649001 I 0.000
TELCIR_11030 Teladorsagia circumcincta TELCIR_11030 I 0.000
WBGene00240171 Onchocerca volvulus WBGene00240171 I 0.000