18116_YNL216W (Saccharomyces mikatae)
Rap1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF09197 (Rap1-DNA-bind) IPR015280 18116_YNL216W T316932_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP1
M00378_2.00
Saccharomyces cerevisiae
RGRTGKAYGG

CCRTMCAYCY
PBM
Berger et al.(2006)
Rap1
0.846 0.846
RAP1
M01564_2.00
Saccharomyces cerevisiae
NGGTGYVNDD

HHNBRCACCN
PBM
Zhu et al.(2009)
Rap1
0.846 0.846
RAP1
M07493_2.00
Saccharomyces cerevisiae
TGTWYGGGTG

CACCCRWACA
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0359.1
0.846 0.846
RAP1
M07556_2.00
Saccharomyces cerevisiae
RTGYRYGGGTG

CACCCRYRCAY
ChIP-exo
Rhee et al.(2011)
Rap1_1
0.846 0.846
RAP1
M07557_2.00
Saccharomyces cerevisiae
GTGTGKGTGTG

CACACMCACAC
ChIP-exo
Rhee et al.(2011)
Rap1_2
0.846 0.846
RAP1
M07558_2.00
Saccharomyces cerevisiae
GGTGTGGTGTG

CACACCACACC
ChIP-exo
Rhee et al.(2011)
Rap1_3
0.846 0.846
RAP1
M08599_2.00
Saccharomyces cerevisiae
DRTGTRYGGGTKY

RMACCCRYACAYH
Misc
DeBoer et al.(2011)
YNL216W_254
0.846 0.846
RAP1
M11214_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$RAP1_03
0.846 0.846
RAP1
M11215_2.00
Saccharomyces cerevisiae
RRTGTMTGGGTKYD

HRMACCCAKACAYY
Transfac
Matys et al.(2006)
F$RAP1_C
0.846 0.846
RAP1
M11216_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$RAP1_Q6
0.846 0.846
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
18116_YNL216W Rap1 301 424
18116_YNL216W Rap1 447 578

Links

Other Rap1 family TFs
Other Saccharomyces mikatae TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AT1G61970 Arabidopsis thaliana AT1G61970 N 0.000
AT1G61980 Arabidopsis thaliana AT1G61980 N 0.000
Bostr.22157s0161 Boechera stricta Bostr.22157s0161 N 0.000
Bostr.22157s0162 Boechera stricta Bostr.22157s0162 N 0.000
Bostr.22157s0163 Boechera stricta Bostr.22157s0163 N 0.000
Cagra.0043s0011 Capsella grandiflora Cagra.0043s0011 N 0.000
Cagra.0043s0012 Capsella grandiflora Cagra.0043s0012 N 0.000
Carubv10021445m.g Capsella rubella Carubv10021445m.g N 0.000
Carubv10021598m.g Capsella rubella Carubv10021598m.g N 0.000
fgenesh2_kg.2__267__AT1G61980.1 Arabidopsis lyrata fgenesh2_kg.2__267__AT1G61980.1 N 0.000
scaffold_200374.1 Arabidopsis lyrata scaffold_200374.1 N 0.000