CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CpipJ_CPIJ015741
(
Culex pipiens
)
Rel
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00554 (RHD_DNA_bind)
IPR011539
CpipJ_CPIJ015741
T316958_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
dl
M02712_2.00
Drosophila melanogaster
SGGGKTTTTYCV
BGRAAAAMCCCS
SELEX
Mathelier et al.(2014)
MA0022.1
0.734
0.734
dl
M02713_2.00
Drosophila melanogaster
GGGGWWTTCC
GGAAWWCCCC
SELEX
Mathelier et al.(2014)
MA0023.1
0.734
0.734
dl
M09691_2.00
Drosophila melanogaster
BRGRWTTYCCM
KGGRAAWYCYV
Misc
Kulakovskiy et al.(2009)
dl
0.734
0.734
dl
M11243_2.00
Drosophila melanogaster
GGGTTTTTCCV
BGGAAAAACCC
Transfac
Matys et al.(2006)
I$DL_01
0.734
0.734
dl
M11244_2.00
Drosophila melanogaster
BRDTTTTCYSD
HSRGAAAAHYV
Transfac
Matys et al.(2006)
I$DL_02
0.734
0.734
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CpipJ_CPIJ015741-RA
Rel
10
180
VVITEQPQSKGLRFRYECEGRSAGSIPGVRSTTEHKTHPTIELRGYKGRAVVVVSCVTKDPPYRAHPHNLVGKDGCKEGVCTVVLNSATMSYTFNNLGIQCVKKKDIEGALRTREKLRVDPYKTGFGHVKQLATIDLNAVRLCFQVFIEGQQPGRFSEPLQPVVSDVIYDK
Links
Other
Rel
family TFs
Other
Culex pipiens
TFs
47 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy