CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Nfkb1
(
Mus musculus
)
Rel
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00554 (RHD_DNA_bind)
IPR011539
ENSMUSG00000028163
T317316_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Nfkb1
M09358_2.00
Mus musculus
GGGRNTTYCCC
GGGRAANYCCC
Misc
Kulakovskiy et al.(2013)
NFKB1_MOUSE.H11MO.0.A
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NFKB1
M03448_2.00
Homo sapiens
MGGGGAWTCCCCT
AGGGGAWTCCCCK
SELEX
Jolma et al.(2013)
NFKB1_1
0.857
0.857
NFKB1
M05887_2.00
Homo sapiens
NGGKRNTYYCCCN
NGGGRRANYMCCN
SMiLE-seq
Isakova et al.(2017)
NFKB1
0.857
0.857
NFKB1
M09348_2.00
Homo sapiens
HYTTCCCY
RGGGAARD
Misc
Kulakovskiy et al.(2013)
NFKB1_HUMAN.H11MO.0.A
0.857
0.857
NFKB1
M11228_2.00
Homo sapiens
GGGGATYCCC
GGGRATCCCC
Transfac
Matys et al.(2006)
V$NFKAPPAB50_01
0.982
0.982
NFKB1
M11229_2.00
Homo sapiens
NGGGAHTYYCCM
KGGRRADTCCCN
Transfac
Matys et al.(2006)
V$NFKB_C
0.982
0.982
NFKB1
M11230_2.00
Homo sapiens
DKGGGAMTTYCCNN
NNGGRAAKTCCCMH
Transfac
Matys et al.(2006)
V$NFKB_Q6
0.982
0.982
NFKB1
M11231_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$P50_Q6
0.982
0.982
NFKB2
M03446_2.00
Homo sapiens
NGGGGAWTCCCCB
VGGGGAWTCCCCN
SELEX
Jolma et al.(2013)
NFKB2_1
0.714
0.714
NFKB2
M05699_2.00
Homo sapiens
HGGKRNWTCCCCN
NGGGGAWNYMCCD
SELEX
Yin et al.(2017)
NFKB2_eDBD_HT-SELEX
0.714
0.714
NFKB2
M09344_2.00
Homo sapiens
GGGRHTTYCCC
GGGRAADYCCC
Misc
Kulakovskiy et al.(2013)
NFKB2_HUMAN.H11MO.0.B
0.714
0.714
Nfkb2
M09356_2.00
Mus musculus
GGGRHTTYCCC
GGGRAADYCCC
Misc
Kulakovskiy et al.(2013)
NFKB2_MOUSE.H11MO.0.C
0.714
0.714
NFKB2
M05700_2.00
Homo sapiens
HGGKRNWTYCCCN
NGGGRAWNYMCCD
SELEX
Yin et al.(2017)
NFKB2_eDBD_Methyl-HT-SELEX
0.714
0.714
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000029812
Rel
42
240
LQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHLHAHSLVGKHCEDGVCTVTAGPKDMVVGFANLGILHVTKKKVFETLEARMTEACIRGYNPGLLVHSDLAYLQAEGGGDRQLTDREKEIIRQAAVQQTKEMDLSVVRLMFTAFLPDSTGSFTRRLEPVVSDAIYDS
ENSMUSP00000128345
Rel
42
240
LQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHLHAHSLVGKHCEDGVCTVTAGPKDMVVGFANLGILHVTKKKVFETLEARMTEACIRGYNPGLLVHSDLAYLQAEGGGDRQLTDREKEIIRQAAVQQTKEMDLSVVRLMFTAFLPDSTGSFTRRLEPVVSDAIYDS
ENSMUSP00000143601
Rel
42
90
LQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKRPPCNRF
Links
Other
Rel
family TFs
Other
Mus musculus
TFs
91 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
NFKB1
Sus scrofa
ENSSSCG00000030957
I
1.000
NFKB1
Bos taurus
ENSBTAG00000020270
I
0.994
ENSBTAP00000027016-D1
Bos grunniens
ENSBTAP00000027016-D1
I
0.994
ENSOARG00000012718
Ovis aries
ENSOARG00000012718
I
0.994
NFKB1
Tursiops truncatus
ENSTTRG00000010852
I
0.988
Nfkb1
Rattus norvegicus
ENSRNOG00000023258
I
0.988
NFKB1
Pteropus vampyrus
ENSPVAG00000002722
I
0.988
NFKB1
Canis familiaris
ENSCAFG00000010730
I
0.988
ENSMPUG00000009413
Mustela putorius furo
ENSMPUG00000009413
I
0.988
NFKB1
Tupaia belangeri
ENSTBEG00000003520
I
0.988
NFKB1
Vicugna pacos
ENSVPAG00000000280
I
0.988
ENSAMEG00000008882
Ailuropoda melanoleuca
ENSAMEG00000008882
I
0.988
NFKB1
Loxodonta africana
ENSLAFG00000009344
I
0.982
NFKB1
Felis catus
ENSFCAG00000007557
I
0.982
NFKB1
Homo sapiens
ENSG00000109320
D
0.982
NFKB1
Gorilla gorilla
ENSGGOG00000009071
I
0.982
ENSP00000226574
Macaca fascicularis
ENSP00000226574
I
0.982
ENSCSAG00000004049
Chlorocebus sabaeus
ENSCSAG00000004049
I
0.982
NFKB1
Cavia porcellus
ENSCPOG00000007789
I
0.982
NFKB1
Pan troglodytes
ENSPTRG00000016320
I
0.982
ENSSTOG00000011445
Ictidomys tridecemlineatus
ENSSTOG00000011445
I
0.982
NFKB1
Macaca mulatta
ENSMMUG00000003736
I
0.982
ENSNLEG00000013325
Nomascus leucogenys
ENSNLEG00000013325
I
0.982
NFKB1
Dasypus novemcinctus
ENSDNOG00000006855
I
0.982
NFKB1
Monodelphis domestica
ENSMODG00000020672
I
0.976
NFKB1
Callithrix jacchus
ENSCJAG00000015382
I
0.976
ENSPPYG00000014965
Pongo abelii
ENSPPYG00000014965
I
0.976
NFKB1
Otolemur garnettii
ENSOGAG00000012840
I
0.976
Nfkb1
Dipodomys ordii
ENSDORG00000007447
I
0.970
ENSSHAG00000007374
Sarcophilus harrisii
ENSSHAG00000007374
I
0.970
NFKB1
Myotis lucifugus
ENSMLUG00000005986
I
0.965
NFKB1
Oryctolagus cuniculus
ENSOCUG00000021712
I
0.965
ENSMEUG00000001334
Macropus eugenii
ENSMEUG00000001334
I
0.965
Myotis_brandtii_NFKB1_10013135
Myotis brandtii
Myotis_brandtii_NFKB1_10013135
I
0.965
NFKB1
Ochotona princeps
ENSOPRG00000005212
I
0.965
NFKB1
Procavia capensis
ENSPCAG00000008172
I
0.953
ENSPANG00000023882
Papio anubis
ENSPANG00000023882
I
0.941
Brh_R011794
Buceros rhinoceros
Brh_R011794
I
0.929
NFKB1
Meleagris gallopavo
ENSMGAG00000011299
I
0.929
ENSFALG00000008136
Ficedula albicollis
ENSFALG00000008136
I
0.929
Tal_R004861
Tyto alba
Tal_R004861
I
0.929
NFKB1
Gallus gallus
ENSGALG00000012304
I
0.929
ENSAPLG00000013878
Anas platyrhynchos
ENSAPLG00000013878
I
0.929
Gfo_R000994
Geospiza fortis
Gfo_R000994
I
0.923
Afo_R015662
Aptenodytes forsteri
Afo_R015662
I
0.923
Aan_R012729
Calypte anna
Aan_R012729
I
0.923
NFKB1
Taeniopygia guttata
ENSTGUG00000003595
I
0.917
Alligator_sinensis_CCG005309.1
Alligator sinensis
Alligator_sinensis_CCG005309.1
I
0.911
ENSPSIG00000008515
Pelodiscus sinensis
ENSPSIG00000008515
I
0.911
NFKB1
Equus caballus
ENSECAG00000015042
I
0.911
NFKB2
Homo sapiens
ENSG00000077150
D
0.897
Pvit_05196
Pogona vitticeps
Pvit_05196
I
0.893
ENSOANG00000028755
Ornithorhynchus anatinus
ENSOANG00000028755
I
0.872
Ogr10707
Ophisaurus gracilis
Ogr10707
I
0.852
NFKB1
Choloepus hoffmanni
ENSCHOG00000010814
N
0.837
nfkb1
Xenopus tropicalis
XB-GENE-985746
I
0.805
ENSLACG00000002751
Latimeria chalumnae
ENSLACG00000002751
I
0.796
nfkb1
Danio rerio
ENSDARG00000105261
I
0.776
ENSXMAG00000015369
Xiphophorus maculatus
ENSXMAG00000015369
I
0.776
nfkb1.L
Xenopus laevis
XB-GENE-985749
I
0.775
ENSLOCG00000012080
Lepisosteus oculatus
ENSLOCG00000012080
I
0.751
Aan_R011824
Calypte anna
Aan_R011824
I
0.735
ENSAMXG00000003341
Astyanax mexicanus
ENSAMXG00000003341
I
0.728
Cmyd_10006544
Chelonia mydas
Cmyd_10006544
I
0.714
Myotis_brandtii_NFKB2_10025917
Myotis brandtii
Myotis_brandtii_NFKB2_10025917
I
0.714
ENSBTAP00000007904-D1
Bos grunniens
ENSBTAP00000007904-D1
I
0.714
Brh_R009664
Buceros rhinoceros
Brh_R009664
I
0.714
Ogr18048
Ophisaurus gracilis
Ogr18048
I
0.714
ENSOARG00000000483
Ovis aries
ENSOARG00000000483
I
0.714
NFKB2
Dasypus novemcinctus
ENSDNOG00000032784
I
0.714
Nfkb2
Dipodomys ordii
ENSDORG00000013409
I
0.714
NFKB2
Equus caballus
ENSECAG00000019593
I
0.714
NFKB2
Felis catus
ENSFCAG00000001242
I
0.714
NFKB2
Cavia porcellus
ENSCPOG00000004847
I
0.714
NFKB2
Callithrix jacchus
ENSCJAG00000017928
I
0.714
ENSAMEG00000017735
Ailuropoda melanoleuca
ENSAMEG00000017735
I
0.714
NFKB2
Bos taurus
ENSBTAG00000006017
I
0.714
NFKB2
Canis familiaris
ENSCAFG00000010155
I
0.714
ENSLACG00000016308
Latimeria chalumnae
ENSLACG00000016308
N
0.714
NFKB2
Myotis lucifugus
ENSMLUG00000006287
I
0.714
NFKB2
Ochotona princeps
ENSOPRG00000006569
I
0.714
Nfkb2
Rattus norvegicus
ENSRNOG00000019311
I
0.714
NFKB2
Sus scrofa
ENSSSCG00000010580
I
0.714
ENSSTOG00000002191
Ictidomys tridecemlineatus
ENSSTOG00000002191
I
0.714
NFKB2
Otolemur garnettii
ENSOGAG00000016379
I
0.714
ENSMPUG00000016882
Mustela putorius furo
ENSMPUG00000016882
I
0.714
NFKB2
Anolis carolinensis
ENSACAG00000014215
I
0.714
Nfkb2
Mus musculus
ENSMUSG00000025225
D
0.714
ENSPFOG00000016918
Poecilia formosa
ENSPFOG00000016918
I
0.710
ENSONIG00000004349
Oreochromis niloticus
ENSONIG00000004349
I
0.704