Nfkb1 (Rattus norvegicus)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00554 (RHD_DNA_bind) IPR011539 ENSRNOG00000023258 T317480_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NFKB1
M03448_2.00
Homo sapiens
MGGGGAWTCCCCT

AGGGGAWTCCCCK
SELEX
Jolma et al.(2013)
NFKB1_1
0.994 0.994
NFKB1
M05887_2.00
Homo sapiens
NGGKRNTYYCCCN

NGGGRRANYMCCN
SMiLE-seq
Isakova et al.(2017)
NFKB1
0.994 0.994
NFKB1
M09348_2.00
Homo sapiens
HYTTCCCY

RGGGAARD
Misc
Kulakovskiy et al.(2013)
NFKB1_HUMAN.H11MO.0.A
0.994 0.994
NFKB1
M11228_2.00
Homo sapiens
GGGGATYCCC

GGGRATCCCC
Transfac
Matys et al.(2006)
V$NFKAPPAB50_01
0.994 0.994
NFKB1
M11229_2.00
Homo sapiens
NGGGAHTYYCCM

KGGRRADTCCCN
Transfac
Matys et al.(2006)
V$NFKB_C
0.994 0.994
NFKB1
M11230_2.00
Homo sapiens
DKGGGAMTTYCCNN

NNGGRAAKTCCCMH
Transfac
Matys et al.(2006)
V$NFKB_Q6
0.994 0.994
NFKB1
M11231_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$P50_Q6
0.994 0.994
Nfkb1
M09358_2.00
Mus musculus
GGGRNTTYCCC

GGGRAANYCCC
Misc
Kulakovskiy et al.(2013)
NFKB1_MOUSE.H11MO.0.A
0.988 0.988
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000028944 Rel 43 241

Links

Other Rel family TFs
Other Rattus norvegicus TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.000
Bra018490 Brassica rapa Bra018490 I 0.000
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.000
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.000
Cla005226 Citrullus lanatus Cla005226 I 0.000
Cla009163 Citrullus lanatus Cla009163 I 0.000
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.000
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.000
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.000
Gorai.013G168300 Gossypium raimondii Gorai.013G168300 I 0.000
Gorai.013G210600 Gossypium raimondii Gorai.013G210600 N 0.000
Gorai.013G210700 Gossypium raimondii Gorai.013G210700 N 0.000
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.000
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.000
MDP0000846004 Malus domestica MDP0000846004 I 0.000
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.000
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.000
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.000
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.000
TCM_026842 Theobroma cacao TCM_026842 I 0.000
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.000
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.000
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.000