Alligator_sinensis_CCG007637.1 (Alligator sinensis)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00554 (RHD_DNA_bind) IPR011539 Alligator_sinensis_CCG007637.1 T317734_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nfatc1
M09360_2.00
Mus musculus
KABTCANWBTTTCCW

WGGAAAVWNTGAVTM
Misc
Kulakovskiy et al.(2013)
NFAC1_MOUSE.H11MO.0.A
0.874 0.874
NFATC1
M02443_2.00
Meleagris gallopavo
NNTTTCCRNN

NNYGGAAANN
PBM
Weirauch et al.(2014)
pTH8315
0.865 0.865
nfatc1
M02446_2.00
Xenopus tropicalis
NNTTTCCRNN

NNYGGAAANN
PBM
Weirauch et al.(2014)
pTH8557
0.865 0.865
NFATC1
M02444_2.00
Monodelphis domestica
NNDTTCCDNN

NNHGGAAHNN
PBM
Weirauch et al.(2014)
pTH8401
0.838 0.838
NFATC1
M03449_2.00
Homo sapiens
HKGRAAADDNWBTTTCCAYN

NRTGGAAAVWNHHTTTYCMD
SELEX
Jolma et al.(2013)
NFATC1_1
0.820 0.820
NFATC1
M03450_2.00
Homo sapiens
TTTCCAYWRYGGAAA

TTTCCRYWRTGGAAA
SELEX
Jolma et al.(2013)
NFATC1_2
0.820 0.820
NFATC1
M03451_2.00
Homo sapiens
NTTTCCATGGAAAN

NTTTCCATGGAAAN
SELEX
Jolma et al.(2013)
NFATC1_3
0.820 0.820
NFATC1
M02747_2.00
Homo sapiens
DTTCCRYGGAA

TTCCRYGGAAH
SELEX
Jolma et al.(2010)
NFATc1_dimer
0.820 0.820
NFATC1
M02748_2.00
Homo sapiens
GGAANDTTCC

GGAAHNTTCC
SELEX
Jolma et al.(2010)
NFATc1_dimer_type2
0.820 0.820
NFATC1
M02749_2.00
Homo sapiens
WDTTTCCAY

RTGGAAAHW
SELEX
Jolma et al.(2010)
NFATc1_monomer
0.820 0.820
NFATC1
M05711_2.00
Homo sapiens
NTTTCCATGGAAAN

NTTTCCATGGAAAN
SELEX
Yin et al.(2017)
NFATC1_eDBD_HT-SELEX_1
0.820 0.820
NFATC1
M05712_2.00
Homo sapiens
NTTTCCRYNNRYGGAAAN

NTTTCCRYNNRYGGAAAN
SELEX
Yin et al.(2017)
NFATC1_eDBD_HT-SELEX_2
0.820 0.820
NFATC1
M09349_2.00
Homo sapiens
HBYHWBWBTTTCCWB

VWGGAAAVWVWDRVD
Misc
Kulakovskiy et al.(2013)
NFAC1_HUMAN.H11MO.0.B
0.820 0.820
NFATC1
M09625_2.00
Homo sapiens
WBTTTCCAYY

RRTGGAAAVW
Misc
Heinz et al.(2010)
Jurkat-NFATC1_Jolma_et_al.
0.820 0.820
NFATC1
M11232_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFAT2_Q4
0.820 0.820
NFATC1
M11233_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFAT2_Q5_01
0.820 0.820
NFATC1
M11234_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFAT2_Q5
0.820 0.820
NFATC1
M05713_2.00
Homo sapiens
NTTTCCRYGGAAAN

NTTTCCRYGGAAAN
SELEX
Yin et al.(2017)
NFATC1_eDBD_Methyl-HT-SELEX_1
0.820 0.820
NFATC1
M05714_2.00
Homo sapiens
NTTTCCRYNNRYGGAAAN

NTTTCCRYNNRYGGAAAN
SELEX
Yin et al.(2017)
NFATC1_eDBD_Methyl-HT-SELEX_2
0.820 0.820
Nfatc3
M09359_2.00
Mus musculus
RDTTTTCCA

TGGAAAAHY
Misc
Kulakovskiy et al.(2013)
NFAC3_MOUSE.H11MO.0.B
0.784 0.784
NFATC3
M02440_2.00
Homo sapiens
DNTTTCCRNN

NNYGGAAANH
PBM
Weirauch et al.(2014)
pTH9192
0.775 0.775
NFATC3
M05693_2.00
Homo sapiens
WNTTTCCRYN

NRYGGAAANW
SELEX
Yin et al.(2017)
NFATC3_eDBD_HT-SELEX_1
0.775 0.775
NFATC3
M05694_2.00
Homo sapiens
NTTTCCATGGAAAN

NTTTCCATGGAAAN
SELEX
Yin et al.(2017)
NFATC3_eDBD_HT-SELEX_2
0.775 0.775
NFATC3
M05695_2.00
Homo sapiens
DYGGAAANNNNNNNTTTCCRH

DYGGAAANNNNNNNTTTCCRH
SELEX
Yin et al.(2017)
NFATC3_eDBD_HT-SELEX_3
0.775 0.775
NFATC3
M09343_2.00
Homo sapiens
RDTTTTCCA

TGGAAAAHY
Misc
Kulakovskiy et al.(2013)
NFAC3_HUMAN.H11MO.0.B
0.775 0.775
NFATC3
M11217_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFAT4_Q3
0.775 0.775
NFATC3
M11218_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFAT4_Q5
0.775 0.775
NFATC3
M05696_2.00
Homo sapiens
WNTTTCCRYN

NRYGGAAANW
SELEX
Yin et al.(2017)
NFATC3_eDBD_Methyl-HT-SELEX_1
0.775 0.775
NFATC3
M05697_2.00
Homo sapiens
NTTTCCRYGGAAAN

NTTTCCRYGGAAAN
SELEX
Yin et al.(2017)
NFATC3_eDBD_Methyl-HT-SELEX_2
0.775 0.775
NFATC3
M05698_2.00
Homo sapiens
RYGGAAANHNNNDNTTTCCRY

RYGGAAANHNNNDNTTTCCRY
SELEX
Yin et al.(2017)
NFATC3_eDBD_Methyl-HT-SELEX_3
0.775 0.775
NFATC2
M02441_2.00
Homo sapiens
WNTTTCCRHN

NDYGGAAANW
PBM
Weirauch et al.(2014)
pTH9196
0.766 0.766
NFATC2
M05705_2.00
Homo sapiens
DTTTCCATGGAAAM

KTTTCCATGGAAAH
SELEX
Yin et al.(2017)
NFATC2_eDBD_HT-SELEX_1
0.766 0.766
NFATC2
M05706_2.00
Homo sapiens
NTTTCCRYNNRYGGAAAN

NTTTCCRYNNRYGGAAAN
SELEX
Yin et al.(2017)
NFATC2_eDBD_HT-SELEX_2
0.766 0.766
NFATC2
M09346_2.00
Homo sapiens
NWTTTTCCW

WGGAAAAWN
Misc
Kulakovskiy et al.(2013)
NFAC2_HUMAN.H11MO.0.B
0.766 0.766
NFATC2
M11221_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFAT1_Q4
0.766 0.766
NFATC2
M11222_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFAT1_Q5
0.766 0.766
NFATC2
M11223_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFAT1_Q6
0.766 0.766
NFATC2
M08462_2.00
Homo sapiens
TTTTCCA

TGGAAAA
COMPILED
Mathelier et al.(2014)
MA0152.1
0.766 0.766
NFATC2
M05707_2.00
Homo sapiens
NTTTCCGCGGAAAN

NTTTCCGCGGAAAN
SELEX
Yin et al.(2017)
NFATC2_eDBD_Methyl-HT-SELEX_1
0.766 0.766
NFATC2
M05708_2.00
Homo sapiens
NTTTCCRYNNRYGGAAAN

NTTTCCRYNNRYGGAAAN
SELEX
Yin et al.(2017)
NFATC2_eDBD_Methyl-HT-SELEX_2
0.766 0.766
Nfatc2
M09357_2.00
Mus musculus
NWTTTTCCW

WGGAAAAWN
Misc
Kulakovskiy et al.(2013)
NFAC2_MOUSE.H11MO.0.C
0.757 0.757
NFATC4
M01306_2.00
Homo sapiens
NNNWWWVYRN

NYRBWWWNNN
PBM
Lambert et al.(2019)
pTH9347
0.730 0.730
NFATC4
M05701_2.00
Homo sapiens
DBTTTCCRYN

NRYGGAAAVH
SELEX
Yin et al.(2017)
NFATC4_eDBD_HT-SELEX_1
0.730 0.730
NFATC4
M05702_2.00
Homo sapiens
NKTTCCATGGAAMV

BKTTCCATGGAAMN
SELEX
Yin et al.(2017)
NFATC4_eDBD_HT-SELEX_2
0.730 0.730
NFATC4
M09345_2.00
Homo sapiens
HNDBTTTCCN

NGGAAAVHND
Misc
Kulakovskiy et al.(2013)
NFAC4_HUMAN.H11MO.0.C
0.730 0.730
Nfatc4
M09354_2.00
Mus musculus
HNDBTTTCCN

NGGAAAVHND
Misc
Kulakovskiy et al.(2013)
NFAC4_MOUSE.H11MO.0.C
0.730 0.730
NFATC4
M11219_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFAT3_Q3_01
0.730 0.730
NFATC4
M11220_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NFAT3_Q3
0.730 0.730
NFATC4
M05703_2.00
Homo sapiens
DNTTTCCRYN

NRYGGAAANH
SELEX
Yin et al.(2017)
NFATC4_eDBD_Methyl-HT-SELEX_1
0.730 0.730
NFATC4
M05704_2.00
Homo sapiens
NKTTCCRYGGAAMN

NKTTCCRYGGAAMN
SELEX
Yin et al.(2017)
NFATC4_eDBD_Methyl-HT-SELEX_2
0.730 0.730
ENSTNIG00000018271
M02445_2.00
Tetraodon nigroviridis
DNDTTCCRNN

NNYGGAAHNH
PBM
Weirauch et al.(2014)
pTH9005
0.721 0.721
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG007637.1 Rel 12 138

Links

Other Rel family TFs
Other Alligator sinensis TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NFATC4 Homo sapiens ENSG00000100968 D 0.794
NFATC1 Homo sapiens ENSG00000131196 D 0.880
Nfatc1 Mus musculus ENSMUSG00000033016 D 0.874
NFATC3 Callithrix jacchus ENSCJAG00000015726 I 0.856
ENSXMAG00000009087 Xiphophorus maculatus ENSXMAG00000009087 I 0.838
ENSXMAG00000003976 Xiphophorus maculatus ENSXMAG00000003976 I 0.721
NFATC2 Takifugu rubripes ENSTRUG00000006498 I 0.769
ENSTNIG00000012105 Tetraodon nigroviridis ENSTNIG00000012105 I 0.733
ENSPPYG00000007483 Pongo abelii ENSPPYG00000007483 I 0.775
ENSPFOG00000021891 Poecilia formosa ENSPFOG00000021891 I 0.721
ENSPFOG00000000831 Poecilia formosa ENSPFOG00000000831 I 0.721
ENSOANG00000021344 Ornithorhynchus anatinus ENSOANG00000021344 I 0.845
NFATC3 Macaca mulatta ENSMMUG00000021843 I 0.866
ENSLACG00000000557 Latimeria chalumnae ENSLACG00000000557 I 0.841
NFATC4 Erinaceus europaeus ENSEEUG00000012781 I 0.721
Brh_R004055 Buceros rhinoceros Brh_R004055 I 0.899