Cmyd_10013204 (Chelonia mydas)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00554 (RHD_DNA_bind) IPR011539 Cmyd_10013204 T317757_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Rela
M08039_2.00
Mus musculus
DGGRVTTTCCM

KGGAAABYCCH
ChIP-seq
Chen et al.(2011)
SRP001843_p65_Input_LPSstim
0.778 0.778
Rela
M08038_2.00
Mus musculus
HHYYYCYYNYHYYYNHYYYYCYWNNSYTBY

RVARSNNWRGRRRRDNRRRDRNRRGRRRDD
ChIP-seq
Chen et al.(2011)
SRP001843_p65_Input
0.778 0.778
Rela
M09355_2.00
Mus musculus
KGGRVTTYCCM

KGGRAABYCCM
Misc
Kulakovskiy et al.(2013)
TF65_MOUSE.H11MO.0.A
0.778 0.778
RELA
M02711_2.00
Homo sapiens
SGGRVTTTCC

GGAAABYCCS
SELEX
Mathelier et al.(2014)
MA0107.1
0.760 0.760
RELA
M07999_2.00
Homo sapiens
DGGGRMTTTCCMVN

NBKGGAAAKYCCCH
ChIP-seq
Gerstein et al.(2012)
GM10847_NFKB_Stanford
0.760 0.760
RELA
M08000_2.00
Homo sapiens
NDGGGRMWTTCCHN

NDGGAAWKYCCCHN
ChIP-seq
Gerstein et al.(2012)
GM12878_NFKB_Stanford
0.760 0.760
RELA
M08001_2.00
Homo sapiens
NDGGGRMTTTCCMVN

NBKGGAAAKYCCCHN
ChIP-seq
Gerstein et al.(2012)
GM12891_NFKB_Stanford
0.760 0.760
RELA
M08002_2.00
Homo sapiens
DGGGRHTTTCCMVNN

NNBKGGAAADYCCCH
ChIP-seq
Gerstein et al.(2012)
GM12892_NFKB_Stanford
0.760 0.760
RELA
M08003_2.00
Homo sapiens
DGGGRVTTTCCHVN

NBDGGAAABYCCCH
ChIP-seq
Gerstein et al.(2012)
GM15510_NFKB_Stanford
0.760 0.760
RELA
M08004_2.00
Homo sapiens
NDGGGRMTTTCCMNN

NNKGGAAAKYCCCHN
ChIP-seq
Gerstein et al.(2012)
GM18505_NFKB_Stanford
0.760 0.760
RELA
M08005_2.00
Homo sapiens
NDGGGRHTTTCCMVN

NBKGGAAADYCCCHN
ChIP-seq
Gerstein et al.(2012)
GM18526_NFKB_Stanford
0.760 0.760
RELA
M08006_2.00
Homo sapiens
GGGRVTTTCCM

KGGAAABYCCC
ChIP-seq
Gerstein et al.(2012)
GM18951_NFKB_Stanford
0.760 0.760
RELA
M08007_2.00
Homo sapiens
DGGGRMTTTCCMV

BKGGAAAKYCCCH
ChIP-seq
Gerstein et al.(2012)
GM19099_NFKB_Stanford
0.760 0.760
RELA
M08008_2.00
Homo sapiens
DGGGRMTTTCCMNNN

NNNKGGAAAKYCCCH
ChIP-seq
Gerstein et al.(2012)
GM19193_NFKB_Stanford
0.760 0.760
RELA
M09351_2.00
Homo sapiens
NWGGGRHWTTCCMV

BKGGAAWDYCCCWN
Misc
Kulakovskiy et al.(2013)
TF65_HUMAN.H11MO.0.A
0.760 0.760
RELA
M09626_2.00
Homo sapiens
DGGGRVWTTCCM

KGGAAWBYCCCH
Misc
Heinz et al.(2010)
GM12787-p65_GSE19485
0.760 0.760
RELA
M11237_2.00
Homo sapiens
BGGRVTTTCC

GGAAABYCCV
Transfac
Matys et al.(2006)
V$NFKAPPAB65_01
0.760 0.760
RELA
M11238_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_02
0.760 0.760
RELA
M11239_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_03
0.760 0.760
RELA
M11240_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_04
0.760 0.760
RELA
M11241_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_05
0.760 0.760
RELA
M11242_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_Q6
0.760 0.760
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10013204 Rel 27 194

Links

Other Rel family TFs
Other Chelonia mydas TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSPSIG00000002944 Pelodiscus sinensis ENSPSIG00000002944 I 0.976
RELA Tupaia belangeri ENSTBEG00000004751 I 0.901
ENSCHOG00000004207 Choloepus hoffmanni ENSCHOG00000004207 I 0.901
RELA Homo sapiens ENSG00000173039 D 0.899
Ogr00666 Ophisaurus gracilis Ogr00666 I 0.802
rela Xenopus tropicalis XB-GENE-946506 I 0.796
Pvit_10466 Pogona vitticeps Pvit_10466 I 0.796
rela.L Xenopus laevis XB-GENE-946512 I 0.796
ENSPPYG00000003053 Pongo abelii ENSPPYG00000003053 I 0.789
RELA Microcebus murinus ENSMICG00000008872 I 0.789
RELA Sus scrofa ENSSSCG00000012981 I 0.789
ENSNLEG00000005769 Nomascus leucogenys ENSNLEG00000005769 I 0.789
RELA Pan troglodytes ENSPTRG00000003889 I 0.789
RELA Loxodonta africana ENSLAFG00000021967 I 0.789
RELA Gorilla gorilla ENSGGOG00000011810 I 0.789
RELA Dasypus novemcinctus ENSDNOG00000039743 I 0.789
RELA Cavia porcellus ENSCPOG00000020593 I 0.784
ENSPANG00000013650 Papio anubis ENSPANG00000013650 I 0.784
ENSP00000384273 Macaca fascicularis ENSP00000384273 I 0.784
ENSCSAG00000007981 Chlorocebus sabaeus ENSCSAG00000007981 I 0.784
RELA Sorex araneus ENSSARG00000003535 I 0.784
RELA Felis catus ENSFCAG00000005696 I 0.784
RELA Macaca mulatta ENSMMUG00000007418 I 0.784
RELA Pteropus vampyrus ENSPVAG00000009983 I 0.783
Rela Rattus norvegicus ENSRNOG00000030888 I 0.783
ENSP00000384273-D1 Bos grunniens ENSP00000384273-D1 I 0.783
Rela Mus musculus ENSMUSG00000024927 D 0.783
RELA Callithrix jacchus ENSCJAG00000002037 I 0.783
RELA Canis familiaris ENSCAFG00000013334 I 0.783
ENSAMEG00000017369 Ailuropoda melanoleuca ENSAMEG00000017369 I 0.783
RELA Bos taurus ENSBTAG00000013895 I 0.783
RELA Equus caballus ENSECAG00000013763 I 0.783
ENSSTOG00000027336 Ictidomys tridecemlineatus ENSSTOG00000027336 I 0.778
ENSOARG00000017426 Ovis aries ENSOARG00000017426 I 0.777
RELA Otolemur garnettii ENSOGAG00000014117 I 0.777
Myotis_brandtii_Rela_10030730 Myotis brandtii Myotis_brandtii_Rela_10030730 I 0.772
RELA Tursiops truncatus ENSTTRG00000002311 I 0.772
RELA Myotis lucifugus ENSMLUG00000008727 I 0.772
RELA Monodelphis domestica ENSMODG00000009603 I 0.771
ENSOANG00000004820 Ornithorhynchus anatinus ENSOANG00000004820 I 0.728
RELB Tupaia belangeri ENSTBEG00000001763 I 0.714
ENSMPUG00000011637 Mustela putorius furo ENSMPUG00000011637 I 0.713
ENSMEUG00000005955 Macropus eugenii ENSMEUG00000005955 I 0.702