ENSBTAP00000007904-D1 (Bos grunniens)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00554 (RHD_DNA_bind) IPR011539 ENSBTAP00000007904-D1 T317763_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nfkb2
M09356_2.00
Mus musculus
GGGRHTTYCCC

GGGRAADYCCC
Misc
Kulakovskiy et al.(2013)
NFKB2_MOUSE.H11MO.0.C
1.000 1.000
NFKB2
M03446_2.00
Homo sapiens
NGGGGAWTCCCCB

VGGGGAWTCCCCN
SELEX
Jolma et al.(2013)
NFKB2_1
0.976 0.976
NFKB2
M05699_2.00
Homo sapiens
HGGKRNWTCCCCN

NGGGGAWNYMCCD
SELEX
Yin et al.(2017)
NFKB2_eDBD_HT-SELEX
0.976 0.976
NFKB2
M09344_2.00
Homo sapiens
GGGRHTTYCCC

GGGRAADYCCC
Misc
Kulakovskiy et al.(2013)
NFKB2_HUMAN.H11MO.0.B
0.976 0.976
NFKB2
M05700_2.00
Homo sapiens
HGGKRNWTYCCCN

NGGGRAWNYMCCD
SELEX
Yin et al.(2017)
NFKB2_eDBD_Methyl-HT-SELEX
0.976 0.976
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000007904-D1 Rel 40 220

Links

Other Rel family TFs
Other Bos grunniens TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA026156 Oryza indica BGIOSGA026156 N 0.000
Traes_2AS_A117C8692 Triticum aestivum Traes_2AS_A117C8692 N 0.000
Traes_2BS_2530470BF Triticum aestivum Traes_2BS_2530470BF N 0.000
Traes_2DS_199F7B30E Triticum aestivum Traes_2DS_199F7B30E N 0.000
TRAES3BF066700010CFD_g Triticum aestivum TRAES3BF066700010CFD_g N 0.000
Traes_3DS_796E4C73A Triticum aestivum Traes_3DS_796E4C73A N 0.000
TRIUR3_01802 Triticum urartu TRIUR3_01802 N 0.000
TRIUR3_27662 Triticum urartu TRIUR3_27662 N 0.000
Pavir.Ib01030 Panicum virgatum Pavir.Ib01030 N 0.000
Si033977m.g Setaria italica Si033977m.g N 0.000
OS07G0619600 Oryza sativa OS07G0619600 N 0.000
ORUFI07G23500 Oryza rufipogon ORUFI07G23500 N 0.000
F775_28106 Aegilops tauschii F775_28106 N 0.000
LPERR07G19470 Leersia perrieri LPERR07G19470 N 0.000
MLOC_6327 Hordeum vulgare MLOC_6327 N 0.000
OBART07G22470 Oryza barthii OBART07G22470 N 0.000
OGLUM07G22360 Oryza glumaepatula OGLUM07G22360 N 0.000
OMERI07G18770 Oryza meridionalis OMERI07G18770 N 0.000
ONIVA07G21870 Oryza nivara ONIVA07G21870 N 0.000
OPUNC07G21080 Oryza punctata OPUNC07G21080 N 0.000
Pavir.J13571 Panicum virgatum Pavir.J13571 N 0.000