Gfo_R000994 (Geospiza fortis)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00554 (RHD_DNA_bind) IPR011539 Gfo_R000994 T317784_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nfkb1
M09358_2.00
Mus musculus
GGGRNTTYCCC

GGGRAANYCCC
Misc
Kulakovskiy et al.(2013)
NFKB1_MOUSE.H11MO.0.A
0.923 0.923
NFKB1
M03448_2.00
Homo sapiens
MGGGGAWTCCCCT

AGGGGAWTCCCCK
SELEX
Jolma et al.(2013)
NFKB1_1
0.911 0.911
NFKB1
M05887_2.00
Homo sapiens
NGGKRNTYYCCCN

NGGGRRANYMCCN
SMiLE-seq
Isakova et al.(2017)
NFKB1
0.911 0.911
NFKB1
M09348_2.00
Homo sapiens
HYTTCCCY

RGGGAARD
Misc
Kulakovskiy et al.(2013)
NFKB1_HUMAN.H11MO.0.A
0.911 0.911
NFKB1
M11228_2.00
Homo sapiens
GGGGATYCCC

GGGRATCCCC
Transfac
Matys et al.(2006)
V$NFKAPPAB50_01
0.911 0.911
NFKB1
M11229_2.00
Homo sapiens
NGGGAHTYYCCM

KGGRRADTCCCN
Transfac
Matys et al.(2006)
V$NFKB_C
0.911 0.911
NFKB1
M11230_2.00
Homo sapiens
DKGGGAMTTYCCNN

NNGGRAAKTCCCMH
Transfac
Matys et al.(2006)
V$NFKB_Q6
0.911 0.911
NFKB1
M11231_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$P50_Q6
0.911 0.911
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R000994 Rel 52 250

Links

Other Rel family TFs
Other Geospiza fortis TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSFALG00000008136 Ficedula albicollis ENSFALG00000008136 I 0.994
Afo_R015662 Aptenodytes forsteri Afo_R015662 I 0.994
Tal_R004861 Tyto alba Tal_R004861 I 0.988
NFKB1 Taeniopygia guttata ENSTGUG00000003595 I 0.976
Aan_R012729 Calypte anna Aan_R012729 I 0.976
NFKB1 Meleagris gallopavo ENSMGAG00000011299 I 0.976
NFKB1 Sus scrofa ENSSSCG00000030957 I 0.976
Brh_R011794 Buceros rhinoceros Brh_R011794 I 0.976
NFKB1 Gallus gallus ENSGALG00000012304 I 0.976
ENSAPLG00000013878 Anas platyrhynchos ENSAPLG00000013878 I 0.976
NFKB1 Homo sapiens ENSG00000109320 D 0.940
ENSPSIG00000008515 Pelodiscus sinensis ENSPSIG00000008515 I 0.929
Alligator_sinensis_CCG005309.1 Alligator sinensis Alligator_sinensis_CCG005309.1 I 0.929
NFKB1 Cavia porcellus ENSCPOG00000007789 I 0.923
NFKB1 Dasypus novemcinctus ENSDNOG00000006855 I 0.923
NFKB1 Bos taurus ENSBTAG00000020270 I 0.923
Nfkb1 Mus musculus ENSMUSG00000028163 D 0.923
ENSBTAP00000027016-D1 Bos grunniens ENSBTAP00000027016-D1 I 0.923
ENSOARG00000012718 Ovis aries ENSOARG00000012718 I 0.923
NFKB1 Monodelphis domestica ENSMODG00000020672 I 0.917
NFKB1 Tupaia belangeri ENSTBEG00000003520 I 0.917
ENSMPUG00000009413 Mustela putorius furo ENSMPUG00000009413 I 0.917
ENSAMEG00000008882 Ailuropoda melanoleuca ENSAMEG00000008882 I 0.917
ENSSTOG00000011445 Ictidomys tridecemlineatus ENSSTOG00000011445 I 0.917
ENSSHAG00000007374 Sarcophilus harrisii ENSSHAG00000007374 I 0.917
Nfkb1 Rattus norvegicus ENSRNOG00000023258 I 0.917
NFKB1 Tursiops truncatus ENSTTRG00000010852 I 0.917
NFKB1 Vicugna pacos ENSVPAG00000000280 I 0.917
NFKB1 Pteropus vampyrus ENSPVAG00000002722 I 0.917
NFKB1 Canis familiaris ENSCAFG00000010730 I 0.917
NFKB1 Pan troglodytes ENSPTRG00000016320 I 0.911
NFKB1 Otolemur garnettii ENSOGAG00000012840 I 0.911
ENSPPYG00000014965 Pongo abelii ENSPPYG00000014965 I 0.911
ENSMEUG00000001334 Macropus eugenii ENSMEUG00000001334 I 0.911
Nfkb1 Dipodomys ordii ENSDORG00000007447 I 0.911
ENSCSAG00000004049 Chlorocebus sabaeus ENSCSAG00000004049 I 0.911
NFKB1 Callithrix jacchus ENSCJAG00000015382 I 0.911
ENSP00000226574 Macaca fascicularis ENSP00000226574 I 0.911
NFKB1 Felis catus ENSFCAG00000007557 I 0.911
NFKB1 Macaca mulatta ENSMMUG00000003736 I 0.911
NFKB1 Loxodonta africana ENSLAFG00000009344 I 0.911
NFKB1 Gorilla gorilla ENSGGOG00000009071 I 0.911
ENSNLEG00000013325 Nomascus leucogenys ENSNLEG00000013325 I 0.911
NFKB1 Myotis lucifugus ENSMLUG00000005986 I 0.905
Myotis_brandtii_NFKB1_10013135 Myotis brandtii Myotis_brandtii_NFKB1_10013135 I 0.905
NFKB1 Oryctolagus cuniculus ENSOCUG00000021712 I 0.899
NFKB2 Homo sapiens ENSG00000077150 D 0.897
ENSOANG00000022123 Ornithorhynchus anatinus ENSOANG00000022123 I 0.896
ENSOANG00000028755 Ornithorhynchus anatinus ENSOANG00000028755 I 0.894
NFKB1 Ochotona princeps ENSOPRG00000005212 I 0.893
Pvit_05196 Pogona vitticeps Pvit_05196 I 0.888
ENSPANG00000023882 Papio anubis ENSPANG00000023882 I 0.882
NFKB1 Procavia capensis ENSPCAG00000008172 I 0.882
NFKB1 Equus caballus ENSECAG00000015042 I 0.858
Ogr10707 Ophisaurus gracilis Ogr10707 I 0.834
ENSLACG00000002751 Latimeria chalumnae ENSLACG00000002751 I 0.799
nfkb1 Xenopus tropicalis XB-GENE-985746 I 0.769
nfkb1.L Xenopus laevis XB-GENE-985749 I 0.751
ENSLOCG00000012080 Lepisosteus oculatus ENSLOCG00000012080 I 0.751
ENSAMXG00000003341 Astyanax mexicanus ENSAMXG00000003341 I 0.751
nfkb1 Danio rerio ENSDARG00000105261 I 0.734