Myotis_brandtii_Rela_10030730 (Myotis brandtii)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00554 (RHD_DNA_bind) IPR011539 Myotis_brandtii_Rela_10030730 T317800_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Rela
M08039_2.00
Mus musculus
DGGRVTTTCCM

KGGAAABYCCH
ChIP-seq
Chen et al.(2011)
SRP001843_p65_Input_LPSstim
0.940 0.940
Rela
M08038_2.00
Mus musculus
HHYYYCYYNYHYYYNHYYYYCYWNNSYTBY

RVARSNNWRGRRRRDNRRRDRNRRGRRRDD
ChIP-seq
Chen et al.(2011)
SRP001843_p65_Input
0.940 0.940
Rela
M09355_2.00
Mus musculus
KGGRVTTYCCM

KGGRAABYCCM
Misc
Kulakovskiy et al.(2013)
TF65_MOUSE.H11MO.0.A
0.940 0.940
RELA
M02711_2.00
Homo sapiens
SGGRVTTTCC

GGAAABYCCS
SELEX
Mathelier et al.(2014)
MA0107.1
0.934 0.934
RELA
M07999_2.00
Homo sapiens
DGGGRMTTTCCMVN

NBKGGAAAKYCCCH
ChIP-seq
Gerstein et al.(2012)
GM10847_NFKB_Stanford
0.934 0.934
RELA
M08000_2.00
Homo sapiens
NDGGGRMWTTCCHN

NDGGAAWKYCCCHN
ChIP-seq
Gerstein et al.(2012)
GM12878_NFKB_Stanford
0.934 0.934
RELA
M08001_2.00
Homo sapiens
NDGGGRMTTTCCMVN

NBKGGAAAKYCCCHN
ChIP-seq
Gerstein et al.(2012)
GM12891_NFKB_Stanford
0.934 0.934
RELA
M08002_2.00
Homo sapiens
DGGGRHTTTCCMVNN

NNBKGGAAADYCCCH
ChIP-seq
Gerstein et al.(2012)
GM12892_NFKB_Stanford
0.934 0.934
RELA
M08003_2.00
Homo sapiens
DGGGRVTTTCCHVN

NBDGGAAABYCCCH
ChIP-seq
Gerstein et al.(2012)
GM15510_NFKB_Stanford
0.934 0.934
RELA
M08004_2.00
Homo sapiens
NDGGGRMTTTCCMNN

NNKGGAAAKYCCCHN
ChIP-seq
Gerstein et al.(2012)
GM18505_NFKB_Stanford
0.934 0.934
RELA
M08005_2.00
Homo sapiens
NDGGGRHTTTCCMVN

NBKGGAAADYCCCHN
ChIP-seq
Gerstein et al.(2012)
GM18526_NFKB_Stanford
0.934 0.934
RELA
M08006_2.00
Homo sapiens
GGGRVTTTCCM

KGGAAABYCCC
ChIP-seq
Gerstein et al.(2012)
GM18951_NFKB_Stanford
0.934 0.934
RELA
M08007_2.00
Homo sapiens
DGGGRMTTTCCMV

BKGGAAAKYCCCH
ChIP-seq
Gerstein et al.(2012)
GM19099_NFKB_Stanford
0.934 0.934
RELA
M08008_2.00
Homo sapiens
DGGGRMTTTCCMNNN

NNNKGGAAAKYCCCH
ChIP-seq
Gerstein et al.(2012)
GM19193_NFKB_Stanford
0.934 0.934
RELA
M09351_2.00
Homo sapiens
NWGGGRHWTTCCMV

BKGGAAWDYCCCWN
Misc
Kulakovskiy et al.(2013)
TF65_HUMAN.H11MO.0.A
0.934 0.934
RELA
M09626_2.00
Homo sapiens
DGGGRVWTTCCM

KGGAAWBYCCCH
Misc
Heinz et al.(2010)
GM12787-p65_GSE19485
0.934 0.934
RELA
M11237_2.00
Homo sapiens
BGGRVTTTCC

GGAAABYCCV
Transfac
Matys et al.(2006)
V$NFKAPPAB65_01
0.934 0.934
RELA
M11238_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_02
0.934 0.934
RELA
M11239_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_03
0.934 0.934
RELA
M11240_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_04
0.934 0.934
RELA
M11241_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_05
0.934 0.934
RELA
M11242_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RELA_Q6
0.934 0.934
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Myotis_brandtii_Rela_10030730 Rel 16 181

Links

Other Rel family TFs
Other Myotis brandtii TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SPL7 Arabidopsis thaliana AT5G18830 D 0.000
PK29723.1 Cannabis sativa PK29723.1 I 0.000
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.000
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.000
mgf004695m Mimulus guttatus mgf004695m I 0.000
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.000
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.000
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I 0.000
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I 0.000
29726.m003959 Ricinus communis 29726.m003959 I 0.000
Pm008092 Prunus mume Pm008092 I 0.000
Cla022022 Citrullus lanatus Cla022022 I 0.000
Ca_00550 Cicer arietinum Ca_00550 I 0.000
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.000
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.000
Carubv10002913m.g Capsella rubella Carubv10002913m.g I 0.000
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I 0.000
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.000
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.000
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.000
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.000
Pavir.J03653 Panicum virgatum Pavir.J03653 I 0.000
Pavir.J00965 Panicum virgatum Pavir.J00965 I 0.000
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.000
MDP0000271587 Malus domestica MDP0000271587 I 0.000
MDP0000195461 Malus domestica MDP0000195461 I 0.000
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.000
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.000
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I 0.000
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I 0.000
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.000
TCM_021101 Theobroma cacao TCM_021101 I 0.000
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.000
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.000
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.000
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.000
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.000
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.000
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.000
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.000
F775_04392 Aegilops tauschii F775_04392 I 0.000
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.000
Bra023695 Brassica rapa Bra023695 I 0.000
Bra002188 Brassica rapa Bra002188 I 0.000
Bo9g154530 Brassica oleracea Bo9g154530 I 0.000
Bo00629s160 Brassica oleracea Bo00629s160 I 0.000
MTR_2g020620 Medicago truncatula MTR_2g020620 I 0.000
OB05G24080 Oryza brachyantha OB05G24080 I 0.000
OBART05G16150 Oryza barthii OBART05G16150 I 0.000
Si021754m.g Setaria italica Si021754m.g I 0.000
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.000
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.000
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.000
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.000
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.000
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.000
SPL9 Oryza sativa OS05G0408200 I 0.000
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.000
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.000
ONIVA05G16770 Oryza nivara ONIVA05G16770 I 0.000
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.000
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.000
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.000