CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ogr18048
(
Ophisaurus gracilis
)
Rel
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00554 (RHD_DNA_bind)
IPR011539
Ogr18048
T317811_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Nfkb2
M09356_2.00
Mus musculus
GGGRHTTYCCC
GGGRAADYCCC
Misc
Kulakovskiy et al.(2013)
NFKB2_MOUSE.H11MO.0.C
0.787
0.787
NFKB2
M03446_2.00
Homo sapiens
NGGGGAWTCCCCB
VGGGGAWTCCCCN
SELEX
Jolma et al.(2013)
NFKB2_1
0.781
0.781
NFKB2
M05699_2.00
Homo sapiens
HGGKRNWTCCCCN
NGGGGAWNYMCCD
SELEX
Yin et al.(2017)
NFKB2_eDBD_HT-SELEX
0.781
0.781
NFKB2
M09344_2.00
Homo sapiens
GGGRHTTYCCC
GGGRAADYCCC
Misc
Kulakovskiy et al.(2013)
NFKB2_HUMAN.H11MO.0.B
0.781
0.781
NFKB2
M05700_2.00
Homo sapiens
HGGKRNWTYCCCN
NGGGRAWNYMCCD
SELEX
Yin et al.(2017)
NFKB2_eDBD_Methyl-HT-SELEX
0.781
0.781
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ogr18048
Rel
40
220
LTIIEQPKQRGFRFRYGCEGPSHGGLPGASSEKGHKTYPTVKISNYVGLARIEVDLVTHTDPPQVHAHSLVGKQCNEAGNCIVTVGPKDMTAQFNNLGVLHVTKKNMMEVIKDKLQKQKIRNGPQSLTESEEEAIGQEAKELKKTMDLSIVRLRFSAYLRDSNGNFTLALKPVISDPIHDS
Links
Other
Rel
family TFs
Other
Ophisaurus gracilis
TFs
61 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy